Deciphering the molecular classification of pediatric sepsis: integrating WGCNA and machine learning-based

Junming Huang1,2, Jinji Chen2, Chengbang Wang2

  • 1Department of Urology, Guangxi Medical University Cancer Hospital, Nanning, Guangxi, China.

Frontiers in Genetics
|February 13, 2024
PubMed

Insights

Pediatric sepsis (PS) involves programmed cell death induced by copper. This study identifies specific cuproptosis-related genes and immune patterns linked to PS, offering new diagnostic insights.

Area of Science:

  • Molecular Biology
  • Immunology
  • Computational Biology

Background:

  • Pediatric sepsis (PS) is a critical condition with high mortality.
  • The role of copper-induced cell death (cuproptosis) in PS is not well understood.

Purpose of the Study:

  • To investigate the involvement of cuproptosis-related genes (CRGs) in pediatric sepsis.
  • To analyze the immune landscape associated with PS and cuproptosis.
  • To develop a diagnostic model for PS.

Main Methods:

  • Analysis of CRG expression and immune landscape in the GSE66099 dataset.
  • Consensus clustering of PS samples based on CRGs.
  • Weighted gene co-expression network analysis to identify hub genes.
  • Application of machine learning for diagnostic model development.

Main Results:

  • Aberrant expression of 27 CRGs was observed in PS samples.
  • Two distinct cuproptosis clusters with unique immune profiles were identified.
  • Extreme Gradient Boosting showed high performance as a PS diagnostic model.

Conclusions:

  • Cuproptosis-related genes and immune cell infiltration are implicated in the molecular mechanisms of pediatric sepsis.
  • Distinct molecular subtypes of PS based on cuproptosis exist.
  • Machine learning models can aid in PS diagnosis.