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Updated: Jul 3, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
A study on the association between gut microbiota, inflammation, and type 2 diabetes
Nannan Liu1, Xuehua Yan2, Bohan Lv1
1Laboratory of Diabetes Research Center, College of Traditional Chinese Medicine, Beijing University of Chinese Medicine, No. 11, Bei San Huan Dong Lu, Beijing, 100029, Chaoyang District, China.
In type 2 diabetes, reduced gut probiotics and skatole production are linked to inflammation via retinoic acid-inducible gene-I-like receptors (RLRs) and NF-κB pathways. This highlights the gut microbiome
Area of Science:
- Microbiome research
- Immunology
- Metabolic disease research
Background:
- Type 2 diabetes mellitus (T2DM) is linked to immune dysfunction and gut microbiome changes.
- The precise mechanisms connecting gut microbes, inflammation, and T2DM progression are not fully understood.
Purpose of the Study:
- To investigate the association between retinoic acid-inducible gene-I-like receptors (RLRs) signaling, gut microbiome, microbial metabolites, inflammation, and T2DM duration.
- To elucidate the role of microbial tryptophan metabolites in T2DM pathogenesis.
Main Methods:
- 16S rRNA amplicon sequencing and untargeted metabolomics on stool samples from T2DM patients and controls.
- RNA sequencing (RNA-seq) on peripheral blood samples.
- Animal models (C57BL/6J SPF mice) were used to validate findings.
Main Results:
- Prolonged T2DM correlated with decreased probiotic abundance (e.g., Bacteroides, Faecalibacterium) and reduced skatole production.
- Low probiotic abundance and skatole levels were associated with increased inflammation via RLRs and NF-κB signaling activation.
- Hyperglycemia may suppress tryptophanase activity, impacting skatole production and potentially GLP-1 expression.
Conclusions:
- Reduced gut probiotics and skatole production in T2DM activate RLRs and NF-κB signaling, contributing to inflammation.
- This study reveals a significant link between gut microbial alterations, inflammation, and the progression of T2DM.
- Targeting the gut microbiome may offer therapeutic strategies for managing T2DM-associated inflammation.
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