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Related Concept Videos

X-ray Diffraction of Biological Samples01:10

X-ray Diffraction of Biological Samples

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X-ray diffraction or XRD is an analytical tool that utilizes X-rays to study ordered structures such as crystalline organic and inorganic samples, polycrystalline materials, proteins, carbohydrates, and drugs.
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are  scattered by the electron clouds around the sample atoms. The  X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal...
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X-ray Crystallography02:18

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The size of the unit cell and the arrangement of atoms in a crystal may be determined from measurements of the diffraction of X-rays by the crystal, termed X-ray crystallography.
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Updated: Jul 3, 2025

Biochemical and Structural Characterization of the Carbohydrate Transport Substrate-binding-protein SP0092
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Raw diffraction data and reproducibility.

Loes M J Kroon-Batenburg1, Matthew P Lightfoot2, Natalie T Johnson2

  • 1Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Universiteitsweg 99, 3584 CG Utrecht, The Netherlands.

Structural Dynamics (Melville, N.Y.)
|February 16, 2024
PubMed
Summary
This summary is machine-generated.

Preserving raw diffraction data offers benefits for understanding reproducibility in structural chemistry. While macromolecular crystallography now requires raw data availability, chemical crystallography has not yet adopted this policy.

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Area of Science:

  • Crystallography
  • Data Science
  • Structural Chemistry

Background:

  • Digital storage expansion enables hosting raw diffraction datasets.
  • The structural chemistry community is considering the benefits and costs of preserving experimental diffraction data.

Purpose of the Study:

  • To consult the global structural chemistry community regarding raw diffraction data preservation.
  • To analyze statistics on raw diffraction dataset depositions by probe and facility type.

Main Methods:

  • Consultations with the International Union of Crystallography (IUCr) Committee on Data and the IUCrData Raw Data Letters initiative.
  • Monitoring of Cambridge Crystallographic Data Centre (CCDC) depositions citing raw diffraction dataset DOIs.
  • Review of updated IUCr Journals publication policies.

Main Results:

  • IUCr Journals now require raw data availability for macromolecular crystallography publications.
  • Chemical crystallography has not yet been recommended for mandatory raw data archiving by the IUCr Commission on Structural Chemistry.
  • CCDC data reveals statistics on raw data deposition by x-ray, neutron, and electron probes, and by home lab versus central facility.

Conclusions:

  • Enhanced understanding of current analysis procedure reproducibility is achievable.
  • Divergent policies exist for raw data archiving in macromolecular versus chemical crystallography.