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Updated: Jul 25, 2026

Examining the Conformational Dynamics of Membrane Proteins in situ with Site-directed Fluorescence Labeling
Published on: May 29, 2011
Are there knobs on energy transducing membranes in situ?
Abstract:
It is argued here that the projections which are frequently seen on the matrix side of the mitochondrial inner membranes and which are characterized as globules or spherical projections or as knob-on-stalks are an artifact of the preparation and/or of the staining of the submitochondrial particles or mitochondria. In sectioned or freeze-fractured preparations of intact cells or mitochondria, the externalized spheres are rarely seen on the membranes. They are, however, almost always seen on fragmented preparations, especially if they have been negatively stained with phosphotungstate.
Insights
Mitochondrial inner membrane spheres, often seen in fragmented preparations, are likely artifacts from sample preparation or staining. These structures are rarely observed in intact cells, suggesting they are not inherent features of the mitochondria.
Area of Science:
- Cell Biology
- Mitochondrial Research
- Electron Microscopy
Background:
- The mitochondrial inner membrane contains projections often described as globules or knob-on-stalks.
- These structures are frequently observed in negatively stained preparations of submitochondrial particles.
Purpose of the Study:
- To investigate whether the observed projections on the mitochondrial inner membrane are true structures or artifacts.
- To determine the influence of sample preparation and staining techniques on the visualization of these mitochondrial features.
Main Methods:
- Comparative analysis of mitochondrial structures using sectioned and freeze-fractured preparations of intact cells and isolated mitochondria.
- Examination of fragmented preparations, particularly those subjected to negative staining with phosphotungstate.
Main Results:
- Externalized spheres on mitochondrial membranes are rarely observed in sectioned or freeze-fractured preparations of intact cells or mitochondria.
- These spherical projections are consistently observed in fragmented preparations, especially when negatively stained with phosphotungstate.
Conclusions:
- The frequently observed projections on the matrix side of the mitochondrial inner membrane are likely artifacts.
- Artifacts arise from the preparation and/or staining methods used for submitochondrial particles or mitochondria.
- The visualization of these structures is highly dependent on the integrity of the preparation and the staining technique employed.
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