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Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Difference analysis and characteristics of incompatibility group plasmid replicons in gram-negative bacteria with
Ruyan Chen1, Chenyu Li1, Haoyu Ge1
1Department of Laboratory Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Background:
Multi-drug-resistant organisms (MDROs) in gram-negative bacteria have caused a global epidemic, especially the bacterial resistance to carbapenem agents. Plasmid is the common vehicle for carrying antimicrobial resistance genes (ARGs), and the transmission of plasmids is also one of the important reasons for the emergence of MDROs. Different incompatibility group plasmid replicons are highly correlated with the acquisition, dissemination, and evolution of resistance genes. Based on this, the study aims to identify relevant characteristics of various plasmids and provide a theoretical foundation for clinical anti-infection treatment.
Methods:
330 gram-negative strains with different antimicrobial phenotypes from a tertiary hospital in Henan Province were included in this study to clarify the difference in incompatibility group plasmid replicons. Additionally, we combined the information from the PLSDB database to elaborate on the potential association between different plasmid replicons and ARGs. The VITEK mass spectrometer was used for species identification, and the VITEK-compact 2 automatic microbial system was used for the antimicrobial susceptibility test (AST). PCR-based replicon typing (PBRT) detected the plasmid profiles, and thirty-three different plasmid replicons were determined. All the carbapenem-resistant organisms (CROs) were tested for the carbapenemase genes.
Results:
21 plasmid replicon types were detected in this experiment, with the highest prevalence of IncFII, IncFIB, IncR, and IncFIA. Notably, the detection rate of IncX3 plasmids in CROs is higher, which is different in strains with other antimicrobial phenotypes. The number of plasmid replicons they carried increased with the strain resistance increase. Enterobacterales took a higher number of plasmid replicons than other gram-negative bacteria. The same strain tends to have more than one plasmid replicon type. IncF-type plasmids tend to be associated with MDROs. Combined with PLSDB database analysis, IncFII and IncX3 are critical platforms for taking blaKPC-2 and blaNDM.
Conclusions:
MDROs tend to carry more complex plasmid replicons compared with non-MDROs. The plasmid replicons that are predominantly prevalent and associated with ARGs differ in various species. The wide distribution of IncF-type plasmids and their close association with MDROs should deserve our attention. Further investigation into the critical role of plasmids in the carriage, evolution, and transmission of ARGs is needed.
Insights
Multi-drug-resistant organisms (MDROs) carry more complex plasmid replicons. IncF-type plasmids are prevalent and associated with antimicrobial resistance genes (ARGs), highlighting their role in bacterial resistance.
Area of Science:
- Microbiology
- Genetics
- Infectious Diseases
Background:
- Global rise of multi-drug-resistant organisms (MDROs), particularly carbapenem-resistant gram-negative bacteria.
- Plasmids are key vectors for antimicrobial resistance genes (ARGs), driving MDRO emergence.
- Plasmid incompatibility group replicons influence ARG acquisition, dissemination, and evolution.
Purpose of the Study:
- Identify characteristics of various plasmids in gram-negative bacteria.
- Elucidate the association between plasmid replicons and ARGs.
- Provide a theoretical basis for clinical anti-infection strategies.
Main Methods:
- Analysis of 330 gram-negative bacterial strains with diverse antimicrobial phenotypes.
- Species identification via VITEK mass spectrometry and antimicrobial susceptibility testing (AST).
- Plasmid profiling using PCR-based replicon typing (PBRT) and carbapenemase gene detection in carbapenem-resistant organisms (CROs).
Main Results:
- 21 plasmid replicon types detected; IncFII, IncFIB, IncR, and IncFIA were most prevalent.
- IncX3 plasmids were more frequent in CROs than other phenotypes.
- MDROs harbored more plasmid replicons; IncF-type plasmids linked to MDROs.
- IncFII and IncX3 identified as key platforms for blaKPC-2 and blaNDM.
Conclusions:
- MDROs exhibit more complex plasmid replicon profiles than non-MDROs.
- Prevalent plasmid replicons and ARG associations vary by bacterial species.
- Widespread IncF-type plasmids and their link to MDROs warrant further attention.
- Further research is needed on plasmid roles in ARG carriage, evolution, and transmission.
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