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Updated: Jul 2, 2025

A Robust Discovery Platform for the Identification of Novel Mediators of Melanoma Metastasis
Published on: March 8, 2022
The therapeutically actionable long non-coding RNA 'T-RECS' is essential to cancer cells' survival in
Valentin Feichtenschlager1,2, Linan Chen3, Yixuan James Zheng3,4
1Department of Dermatology, Mt Zion Cancer Research Center, University of California San Francisco, 2340 Sutter Street, Room N461, San Francisco, CA, 94115, USA. valentin.feichtenschlager@hotmail.com.
Abstract:
Finding effective therapeutic targets to treat NRAS-mutated melanoma remains a challenge. Long non-coding RNAs (lncRNAs) recently emerged as essential regulators of tumorigenesis. Using a discovery approach combining experimental models and unbiased computational analysis complemented by validation in patient biospecimens, we identified a nuclear-enriched lncRNA (AC004540.4) that is upregulated in NRAS/MAPK-dependent melanoma, and that we named T-RECS. Considering potential innovative treatment strategies, we designed antisense oligonucleotides (ASOs) to target T-RECS. T-RECS ASOs reduced the growth of melanoma cells and induced apoptotic cell death, while having minimal impact on normal primary melanocytes. Mechanistically, treatment with T-RECS ASOs downregulated the activity of pro-survival kinases and reduced the protein stability of hnRNPA2/B1, a pro-oncogenic regulator of MAPK signaling. Using patient- and cell line- derived tumor xenograft mouse models, we demonstrated that systemic treatment with T-RECS ASOs significantly suppressed the growth of melanoma tumors, with no noticeable toxicity. ASO-mediated T-RECS inhibition represents a promising RNA-targeting approach to improve the outcome of MAPK pathway-activated melanoma.
Insights
Targeting the T-RECS long non-coding RNA with antisense oligonucleotides (ASOs) effectively suppressed NRAS-mutated melanoma growth and induced cell death, offering a promising new therapeutic strategy for this challenging cancer.
Area of Science:
- Oncology
- Molecular Biology
- RNA Therapeutics
Background:
- NRAS-mutated melanoma presents significant therapeutic challenges.
- Long non-coding RNAs (lncRNAs) are increasingly recognized as key regulators in cancer development.
- Identifying novel targets is crucial for advancing melanoma treatment.
Purpose of the Study:
- To identify and characterize novel therapeutic targets in NRAS-mutated melanoma.
- To evaluate the therapeutic potential of targeting the lncRNA T-RECS using antisense oligonucleotides (ASOs).
Main Methods:
- Utilized a combination of experimental models, computational analysis, and patient biospecimens for lncRNA discovery.
- Designed and tested T-RECS-specific antisense oligonucleotides (ASOs) in melanoma cell lines and xenograft models.
- Investigated the molecular mechanisms underlying T-RECS ASO activity, including kinase signaling and protein stability.
Main Results:
- Identified T-RECS (AC004540.4), a nuclear-enriched lncRNA upregulated in NRAS/MAPK-dependent melanoma.
- T-RECS ASOs demonstrated potent antimelanoma activity, reducing cell growth and inducing apoptosis with minimal toxicity to normal cells.
- ASO treatment downregulated pro-survival kinases and reduced hnRNPA2/B1 stability, impacting MAPK signaling.
- Systemic ASO treatment significantly suppressed tumor growth in preclinical models without observable toxicity.
Conclusions:
- T-RECS is a validated therapeutic target in NRAS-mutated melanoma.
- ASO-mediated inhibition of T-RECS is a viable and promising RNA-targeting strategy for melanoma.
- This approach offers a potential new avenue for treating MAPK pathway-activated melanoma.
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