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Updated: Jul 2, 2025

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Published on: November 9, 2020
Degraders in epigenetic therapy: PROTACs and beyond
Xing-Jie Dai1, Shi-Kun Ji1, Meng-Jie Fu1
1Key Laboratory of Advanced Drug Preparation Technologies, Ministry of Education, China; State Key Laboratory of Esophageal Cancer Prevention & Treatment; Key Laboratory of Henan Province for Drug Quality and Evaluation; Institute of Drug Discovery and Development; School of Pharmaceutical Sciences, Zhengzhou University, Zhengzhou, China.
Abstract:
Epigenetics refers to the reversible process through which changes in gene expression occur without changing the nucleotide sequence of DNA. The process is currently gaining prominence as a pivotal objective in the treatment of cancers and other ailments. Numerous drugs that target epigenetic mechanisms have obtained approval from the Food and Drug Administration (FDA) for the therapeutic intervention of diverse diseases; many have drawbacks, such as limited applicability, toxicity, and resistance. Since the discovery of the first proteolysis-targeting chimeras (PROTACs) in 2001, studies on targeted protein degradation (TPD)-encompassing PROTACs, molecular glue (MG), hydrophobic tagging (HyT), degradation TAG (dTAG), Trim-Away, a specific and non-genetic inhibitor of apoptosis protein (IAP)-dependent protein eraser (SNIPER), antibody-PROTACs (Ab-PROTACs), and other lysosome-based strategies-have achieved remarkable progress. In this review, we comprehensively highlight the small-molecule degraders beyond PROTACs that could achieve the degradation of epigenetic proteins (including bromodomain-containing protein-related targets, histone acetylation/deacetylation-related targets, histone methylation/demethylation related targets, and other epigenetic targets) via proteasomal or lysosomal pathways. The present difficulties and forthcoming prospects in this domain are also deliberated upon, which may be valuable for medicinal chemists when developing more potent, selective, and drug-like epigenetic drugs for clinical applications.
Insights
Targeted protein degradation (TPD) offers new ways to target epigenetic proteins for cancer therapy. This review explores small-molecule degraders beyond PROTACs, highlighting their potential and challenges.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Epigenetics influences gene expression without altering DNA sequence, making it a key target for treating diseases like cancer.
- Existing epigenetic drugs face limitations including narrow applicability, toxicity, and resistance.
- Targeted Protein Degradation (TPD) strategies, including PROTACs, have advanced significantly.
Purpose of the Study:
- To review small-molecule degraders beyond PROTACs for epigenetic protein targets.
- To explore degradation mechanisms via proteasomal or lysosomal pathways.
- To discuss current challenges and future prospects in developing epigenetic drugs.
Main Methods:
- Comprehensive literature review of small-molecule degraders targeting epigenetic proteins.
- Analysis of various TPD strategies beyond PROTACs (e.g., molecular glues, dTAG).
- Examination of proteasomal and lysosomal degradation pathways for epigenetic targets.
Main Results:
- Small-molecule degraders offer alternative approaches to target epigenetic proteins, including bromodomain, histone acetylation/deacetylation, and methylation targets.
- These degraders utilize proteasomal or lysosomal pathways for protein elimination.
- The review highlights diverse TPD strategies beyond PROTACs.
Conclusions:
- Small-molecule degraders represent a promising frontier for developing novel epigenetic therapies.
- Overcoming challenges in potency, selectivity, and drug-likeness is crucial for clinical translation.
- Further research into TPD mechanisms can lead to more effective epigenetic drugs.
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