Brain Anatomy-Guided MRI Analysis for Assessing Clinical Progression of Cognitive Impairment with Structural MRI

Brain structural MRI has been widely used for assessing future progression of cognitive impairment (CI) based on learning-based methods. Previous studies generally suffer from the limited number of labeled training data, while there exists a huge amount of MRIs in large-scale public databases. Even without task-specific label information, brain anatomical structures provided by these MRIs can be used to boost learning performance intuitively. Unfortunately, existing research seldom takes advantage of such brain anatomy prior. To this end, this paper proposes a brain anatomy-guided representation (BAR) learning framework for assessing the clinical progression of cognitive impairment with T1-weighted MRIs. The BAR consists of a pretext model and a downstream model, with a shared brain anatomy-guided encoder for MRI feature extraction. The pretext model also contains a decoder for brain tissue segmentation, while the downstream model relies on a predictor for classification. We first train the pretext model through a brain tissue segmentation task on 9,544 auxiliary T1-weighted MRIs, yielding a generalizable encoder. The downstream model with the learned encoder is further fine-tuned on target MRIs for prediction tasks. We validate the proposed BAR on two CI-related studies with a total of 391 subjects with T1-weighted MRIs. Experimental results suggest that the BAR outperforms several state-of-the-art (SOTA) methods. The source code and pre-trained models are available at https://github.com/goodaycoder/BAR.