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Updated: Jul 2, 2025

Visualizing Mitophagy with Fluorescent Dyes for Mitochondria and Lysosome
Published on: November 30, 2022
Exposure of the inner mitochondrial membrane triggers apoptotic mitophagy
Tahnee L Saunders1,2,3, Simon P Windley4, Gediminas Gervinskas5
1Department of Anatomy and Developmental Biology, Monash Biomedicine Discovery Institute, Monash University, Melbourne, VIC, Australia. saunders.t@wehi.edu.au.
Abstract:
During apoptosis mediated by the intrinsic pathway, BAX/BAK triggers mitochondrial permeabilization and the release of cytochrome-c, followed by a dramatic remodelling of the mitochondrial network that results in mitochondrial herniation and the subsequent release of pro-inflammatory mitochondrial components. Here, we show that mitochondrial herniation and subsequent exposure of the inner mitochondrial membrane (IMM) to the cytoplasm, initiates a unique form of mitophagy to deliver these damaged organelles to lysosomes. IMM-induced mitophagy occurs independently of canonical PINK1/Parkin signalling and is driven by ubiquitination of the IMM. Our data suggest IMM-induced mitophagy is an additional safety mechanism that cells can deploy to contain damaged mitochondria. It may have particular relevance in situations where caspase activation is incomplete or inhibited, and in contexts where PINK1/Parkin-mitophagy is impaired or overwhelmed.
Insights
Cells utilize inner mitochondrial membrane (IMM) exposure during apoptosis to trigger a unique mitophagy pathway. This IMM-induced mitophagy, independent of PINK1/Parkin, helps clear damaged mitochondria.
Area of Science:
- Cell biology
- Mitochondrial dynamics
- Apoptosis signaling
Background:
- The intrinsic apoptosis pathway involves BAX/BAK-mediated mitochondrial permeabilization, releasing cytochrome-c.
- Mitochondrial outer membrane permeabilization (MOMP) leads to organelle damage and release of inflammatory factors.
Purpose of the Study:
- To investigate the cellular response to mitochondrial herniation during apoptosis.
- To identify novel mitophagy pathways involved in clearing damaged mitochondria.
Main Methods:
- Confocal microscopy to visualize mitochondrial morphology and herniation.
- Biochemical assays to detect ubiquitination of the inner mitochondrial membrane (IMM).
- Genetic manipulation to assess the role of PINK1/Parkin signaling.
Main Results:
- Mitochondrial herniation exposes the IMM to the cytoplasm.
- This exposure initiates a novel mitophagy process, termed IMM-induced mitophagy.
- IMM-induced mitophagy is independent of PINK1/Parkin and relies on IMM ubiquitination.
- This pathway delivers damaged mitochondria to lysosomes for degradation.
Conclusions:
- IMM-induced mitophagy is a distinct mechanism for clearing damaged mitochondria during apoptosis.
- This pathway acts as a cellular safeguard, particularly when canonical pathways are compromised.
- It offers a potential therapeutic target for diseases involving mitochondrial dysfunction.
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