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Updated: Jul 2, 2025

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Employing Digital Droplet PCR to Detect BRAF V600E Mutations in Formalin-fixed Paraffin-embedded Reference Standard Cell Lines
Published on: October 8, 2015
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Assessment of RAS-RAF-MAPK Pathway Mutation Status in Healthy Skin, Benign Nevi, and Cutaneous Melanomas: Pilot Study
Elena-Georgiana Dobre1,2, Luciana Nichita2,3,4, Cristiana Popp2,3,4
1Doctoral School, Faculty of Biology, University of Bucharest, 050095 Bucharest, Romania.
International Journal of Molecular Sciences
|February 24, 2024
Summary
Digital droplet PCR (ddPCR) effectively detects RAS and RAF mutations in melanoma, benign moles, and normal skin. This technology shows promise for broader clinical application in analyzing skin lesion mutational landscapes.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- RAS and RAF mutations are implicated in skin carcinogenesis.
- Understanding mutation prevalence in melanoma and benign nequi is crucial for diagnosis and treatment.
- Assessing novel diagnostic technologies for mutation detection is essential.
Purpose of the Study:
- To evaluate the prevalence and roles of RAS and RAF mutations in melanoma, benign nevi, and normal skin.
- To compare the efficacy of digital droplet PCR (ddPCR) with existing methods for mutation detection.
- To explore the potential of ddPCR in clinical settings for analyzing skin lesion mutational profiles.
Main Methods:
- Utilized digital droplet PCR (ddPCR) and immunohistochemistry (IHC) for mutation analysis.
- Screened melanoma (n=22), benign nevi (n=15), and normal skin (n=15) samples.
- Assessed BRAF V600 and NRAS G12/G13 mutations and p16 protein expression.
Main Results:
- Coexistence of BRAF and NRAS mutations found in melanomas and nevi.
- NRAS G12/G13 variants detected in healthy skin samples.
- BRAF mutations correlated with Breslow index and TIL infiltration; NRAS mutations correlated with Breslow index and mitotic index.
- ddPCR demonstrated high sensitivity for detecting low-frequency mutations, comparable to CE-IVD methods.
Conclusions:
- ddPCR is a sensitive and effective method for detecting RAS and RAF mutations in skin lesions.
- The study identified specific mutation patterns associated with melanoma progression.
- ddPCR is recommended for broader clinical use in analyzing skin tumor mutations.
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