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Updated: Jul 2, 2025

Monitoring Protein-RNA Interaction Dynamics In Vivo at High Temporal Resolution Using χCRAC
Published on: May 9, 2020
ncRNAs Orchestrate Chemosensitivity Induction by Neddylation Blockades
Andrea Pérez-González1, Ivonne Ramírez-Díaz1,2, Josué Guzmán-Linares1
1International Laboratory EPIGEN, Consejo de Ciencia y Tecnología del Estado de Puebla (CONCYTEP), Instituto de Ciencias, Ecocampus, Benemérita Universidad Autónoma de Puebla (BUAP), Puebla 72570, Mexico.
Abstract:
We performed an integrative transcriptomic in silico analysis using lung adenocarcinoma A549 cells treated with the neddylation inhibitor MLN4924 and the gefitinib-resistant PC9 cell line (PC9GR). We focused on the transcriptional effects of the top differentially expressed ncRNA biotypes and their correlating stemness factors. Interestingly, MLN4924-treated cells showed a significant upregulation of mRNAs involved in carcinogenesis, cell attachment, and differentiation pathways, as well as a parallel downregulation of stemness maintenance and survival signaling pathways, an effect that was inversely observed in PC9GR cells. Moreover, we found that stemness factor expression could be contrasted by selected up-regulated ncRNAs upon MLN4924 treatment in a dose and time-independent manner. Furthermore, upregulated miRNAs and lncRNA-targeted mRNAs showed an evident enrichment of proliferation, differentiation, and apoptosis pathways, while downregulated ncRNA-targeted mRNAs were implicated in stem cell maintenance. Finally, our results proved that stemness (KLF4 and FGFR2) and epithelial-mesenchymal transition (ZEB2, TWIST2, SNAI2, CDH2, and VIM) factors, which are highly expressed in PC9GR cells compared to gefitinib-sensitive PC9 cells, could be abrogated with the neddylation inhibitor MLN4924 mainly through activation of epithelial differentiation pathways, thus exerting a protective role in lung cancer cells and chemosensitivity against lung tumorigenic transformation.
Insights
The neddylation inhibitor MLN4924 reverses stemness and epithelial-mesenchymal transition in lung cancer cells. This finding offers potential for new lung cancer therapies by restoring chemosensitivity and promoting differentiation.
Area of Science:
- Oncology
- Molecular Biology
- Bioinformatics
Background:
- Lung adenocarcinoma (LUAD) exhibits resistance to targeted therapies like gefitinib.
- Cancer stemness and epithelial-mesenchymal transition (EMT) are key drivers of drug resistance and tumor progression.
- Neddylation is a post-translational modification implicated in regulating protein stability and function in cancer.
Purpose of the Study:
- To investigate the transcriptomic effects of the neddylation inhibitor MLN4924 on lung adenocarcinoma cells.
- To explore the relationship between ncRNA expression, stemness factors, and drug resistance in LUAD.
- To determine if MLN4924 can reverse stemness and EMT phenotypes in gefitinib-resistant LUAD cells.
Main Methods:
- Integrative transcriptomic in silico analysis of A549 and PC9GR cell lines.
- Treatment with the neddylation inhibitor MLN4924.
- Differential gene expression analysis focusing on ncRNAs and stemness factors.
- Pathway enrichment analysis of differentially expressed genes.
Main Results:
- MLN4924 treatment upregulated pro-carcinogenic and differentiation pathways while downregulating stemness and survival pathways in A549 cells; PC9GR cells showed inverse effects.
- Upregulated ncRNAs upon MLN4924 treatment inversely correlated with stemness factor expression.
- MLN4924 abrogated stemness (KLF4, FGFR2) and EMT (ZEB2, TWIST2, SNAI2, CDH2, VIM) factors in PC9GR cells.
- Upregulated ncRNAs targeted mRNAs enriched in proliferation, differentiation, and apoptosis pathways.
- Downregulated ncRNAs targeted mRNAs implicated in stem cell maintenance.
Conclusions:
- Neddylation inhibition by MLN4924 can reverse stemness and EMT phenotypes in lung cancer cells.
- MLN4924 promotes epithelial differentiation pathways, potentially offering a protective role in lung cancer.
- Targeting neddylation presents a promising strategy to enhance chemosensitivity and combat lung tumorigenesis.
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