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Updated: Jul 2, 2025

Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
Enzymatic-related network of catalysis, polyamine, and tumors for acetylpolyamine oxidase: from calculation to
Dong Fang1,2, Zhiyang Zhang1, Jihang Zhai1
1The Key Laboratory of Natural Medicine and Immuno-Engineering, Henan University Kaifeng 475000 P. R. China zhaoyuan@henu.edu.cn wcjsxq@henu.edu.cn.
Abstract:
The regulation of enzymes and development of polyamine analogs capable of controlling the dynamics of endogenous polyamines to achieve anti-tumor effects is one of the biggest challenges in polyamine research. However, the root of the problem remains unsolved. This study represents a significant milestone as it unveils, for the first time, the comprehensive catalytic map of acetylpolyamine oxidase that includes chemical transformation and product release kinetics, by utilizing multiscale simulations with over six million dynamical snapshots. The transportation of acetylspermine is strongly exothermic, and high binding affinity of enzyme and reactant is observed. The transfer of hydride from polyamine to FAD is the rate-limiting step, via an H-shift coupled electron transfer mechanism. The two products are released in a detour stepwise mechanism, which also impacts the enzymatic efficiency. Inspired by these mechanistic insights into enzymatic catalysis, we propose a novel strategy that regulates the polyamine level and catalytic progress through the action of His64. Directly suppressing APAO by mutating His64 further inhibited growth and migration of tumor cells and tumor tissue in vitro and in vivo. Therefore, the network connecting microcosmic and macroscopic scales opens up new avenues for designing polyamine compounds and conducting anti-tumor research in the future.
Insights
This study maps acetylpolyamine oxidase (APAO) catalysis, revealing a hydride transfer mechanism. Suppressing APAO via His64 mutation inhibits tumor growth, offering new anti-cancer strategies.
Area of Science:
- Biochemistry
- Enzymology
- Computational Chemistry
Background:
- Polyamines are crucial in cellular processes, and their dysregulation is linked to cancer.
- Developing anti-cancer agents targeting polyamine metabolism remains a significant challenge.
- Understanding enzyme mechanisms is key to designing effective therapeutics.
Purpose of the Study:
- To elucidate the comprehensive catalytic mechanism of acetylpolyamine oxidase (APAO).
- To investigate the kinetics of chemical transformation and product release in APAO.
- To explore a novel anti-tumor strategy targeting APAO activity.
Main Methods:
- Multiscale simulations utilizing over six million dynamical snapshots.
- Analysis of enzyme-substrate binding and reaction pathways.
- In vitro and in vivo studies involving tumor cell lines and tissues.
Main Results:
- Detailed catalytic map of APAO, including exothermic acetylspermine transport and high binding affinity.
- Identification of hydride transfer to FAD as the rate-limiting step via H-shift coupled electron transfer.
- Stepwise product release mechanism impacting enzymatic efficiency and demonstration that His64 mutation inhibits tumor growth and migration.
Conclusions:
- The study provides unprecedented mechanistic insights into APAO catalysis.
- Targeting APAO, specifically through His64, presents a promising therapeutic strategy for cancer treatment.
- This research opens new avenues for designing polyamine analogs and advancing anti-tumor research.
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