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A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
Alternative splicing-related long noncoding RNA ANRIL facilitates hepatocellular carcinoma by targeting the
Yifan Zhang1, Yiquan Lu1, Nan Wang1
1Department of General Surgery, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, People's Republic of China.
Abstract:
Hepatocellular carcinoma (HCC) is characterized by aberrant alternative splicing (AS), which plays an important part in the pathological process of this disease. However, available reports about genes and mechanisms involved in AS process are limited. Our previous research has identified ANRIL as a long noncoding RNA related to the AS process of HCC. Here, we investigated the exact effect and the mechanism of ANRIL on HCC progress. The ANRIL expression profile was validated using the real-time quantitative polymerase chain reaction assay. The western blot analysis and IHC assay were conducted on candidate targets, including SRSF1 and Anillin. The clinicopathological features of 97 patients were collected and analyzed. Loss-of and gain-of-function experiments were conducted. The dual-luciferase reporter assay was applied to verify the interaction between ANRIL, miR-199a-5p, and SRSF1. Anomalous upregulation of ANRIL in HCC was observed, correlating with worse clinicopathological features of HCC. HCC cell proliferation, mobility, tumorigenesis, and metastasis were impaired by depleting ANRIL. We found that ANRIL acts as a sponger of miRNA-199a-5p, resulting in an elevated level of its target protein SRSF1. The phenotypes induced by ANRIL/miR-199a-5p/SRSF1 alteration are associated with Anillin, a validated HCC promoter. ANRIL is an AS-related lncRNA promoting HCC progress by modulating the miR-199a-5p/SRSF1 axis. The downstream effector of this axis in the development of HCC is Anillin.
Insights
Long noncoding RNA ANRIL promotes hepatocellular carcinoma (HCC) progression by regulating alternative splicing. Depleting ANRIL impairs HCC cell growth and metastasis by modulating the miR-199a-5p/SRSF1 axis.
Area of Science:
- Oncology
- Molecular Biology
- Gene Regulation
Background:
- Aberrant alternative splicing (AS) is a hallmark of hepatocellular carcinoma (HCC).
- Long noncoding RNAs (lncRNAs) are increasingly recognized for their roles in cancer, but their involvement in HCC's AS remains underexplored.
- Our prior work implicated ANRIL in HCC-related AS.
Purpose of the Study:
- To elucidate the precise role and underlying mechanism of ANRIL in HCC progression.
- To investigate the relationship between ANRIL, microRNAs, and splicing factors in HCC.
Main Methods:
- Validated ANRIL expression via real-time quantitative polymerase chain reaction.
- Assessed protein levels of SRSF1 and Anillin using western blot and immunohistochemistry.
- Conducted loss-of- and gain-of-function experiments in HCC cells.
- Utilized dual-luciferase reporter assays to confirm interactions within the ANRIL/miR-199a-5p/SRSF1 pathway.
Main Results:
- ANRIL was significantly upregulated in HCC, correlating with adverse clinicopathological features.
- ANRIL depletion inhibited HCC cell proliferation, migration, tumorigenesis, and metastasis.
- ANRIL functions as a molecular sponge for miR-199a-5p, leading to increased SRSF1 levels.
- The ANRIL/miR-199a-5p/SRSF1 axis influences Anillin, a known HCC promoter.
Conclusions:
- ANRIL is an alternative splicing-associated lncRNA that promotes HCC.
- ANRIL drives HCC progression by modulating the miR-199a-5p/SRSF1 axis, with Anillin acting as a key downstream effector.
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