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Updated: Jul 2, 2025

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Structural analysis of PTPN21 reveals a dominant-negative effect of the FERM domain on its phosphatase activity
Lu Chen1,2, Zijun Qian3, Yuyuan Zheng2,4
1Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310016, China.
Abstract:
PTPN21 belongs to the four-point-one, ezrin, radixin, moesin (FERM) domain-containing protein tyrosine phosphatases (PTP) and plays important roles in cytoskeleton-associated cellular processes like cell adhesion, motility, and cargo transport. Because of the presence of a WPE loop instead of a WPD loop in the phosphatase domain, it is often considered to lack phosphatase activity. However, many of PTPN21's biological functions require its catalytic activity. To reconcile these findings, we have determined the structures of individual PTPN21 FERM, PTP domains, and a complex between FERM-PTP. Combined with biochemical analysis, we have found that PTPN21 PTP is weakly active and is autoinhibited by association with its FERM domain. Disruption of FERM-PTP interaction results in enhanced ERK activation. The oncogenic HPV18 E7 protein binds to PTP at the same location as PTPN21 FERM, indicating that it may act by displacing the FERM domain from PTP. Our results provide mechanistic insight into PTPN21 and benefit functional studies of PTPN21-mediated processes.
Insights
Protein tyrosine phosphatase N21 (PTPN21) is weakly active and autoinhibited by its FERM domain. Disrupting this interaction enhances ERK signaling, offering insights into PTPN21
Area of Science:
- Molecular Biology
- Biochemistry
- Cell Biology
Background:
- Protein tyrosine phosphatase N21 (PTPN21) is a member of the FERM domain-containing PTP family, crucial for cytoskeleton-associated cellular processes.
- PTPN21's phosphatase domain contains a WPE loop, unlike the canonical WPD loop, leading to assumptions of lacking catalytic activity, despite its known functions.
- Reconciling PTPN21's structural features with its biological roles necessitates understanding its catalytic activity and regulation.
Purpose of the Study:
- To elucidate the structural and biochemical basis of PTPN21 regulation.
- To investigate the interplay between the FERM and PTP domains of PTPN21.
- To understand the mechanism of PTPN21 regulation by oncogenic proteins like HPV18 E7.
Main Methods:
- Determination of the crystal structures of individual PTPN21 FERM and PTP domains, and the FERM-PTP complex.
- Biochemical analyses to assess PTPN21's catalytic activity and regulatory mechanisms.
- Investigation of the interaction between HPV18 E7 oncoprotein and PTPN21.
Main Results:
- PTPN21 exhibits weak catalytic activity and is autoinhibited through the association of its FERM domain with the PTP domain.
- Disruption of the FERM-PTP interaction leads to enhanced extracellular signal-regulated kinase (ERK) activation.
- The oncogenic HPV18 E7 protein binds to PTPN21 at the FERM domain binding site, suggesting a mechanism of FERM domain displacement.
Conclusions:
- PTPN21 is a catalytically weak, autoinhibited enzyme regulated by its FERM domain.
- The FERM-PTP interaction is critical for PTPN21's basal activity and regulation.
- HPV18 E7 may modulate PTPN21 activity by displacing the FERM domain, impacting cellular signaling pathways.
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