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Optimized Analysis of DNA Methylation and Gene Expression from Small, Anatomically-defined Areas of the Brain
Published on: July 12, 2012
Epigenome-wide association study identifies neonatal DNA methylation associated with two-year attention problems in
Marie Camerota1,2, Barry M Lester3,4,5, Francisco Xavier Castellanos6,7
1Department of Psychiatry and Human Behavior, Alpert Medical School of Brown University, Providence, RI, USA. marie_camerota@brown.edu.
Insights
Neonatal DNA methylation predicts attention problems in very preterm infants by age two. This epigenetic information may help identify at-risk children for early intervention.
Area of Science:
- Neuroscience
- Genetics
- Developmental Psychology
Background:
- Previous research identified epigenetic predictors of attention problems in older children.
- These predictors have not been studied in young children or those at high risk due to preterm birth.
Purpose of the Study:
- To investigate epigenome-wide associations between neonatal DNA methylation and attention problems at age two in very preterm infants.
- To identify potential early biomarkers for attention difficulties in this vulnerable population.
Main Methods:
- The study analyzed data from 441 very preterm infants (<30 weeks gestational age) from the Neonatal Neurobehavior and Outcomes in Very Preterm Infants (NOVI) Study.
- Neonatal DNA methylation was measured using buccal swabs and the Illumina MethylationEPIC Bead Array.
- Attention problems were assessed at two years using the Child Behavior Checklist (CBCL).
Main Results:
- DNA methylation at 33 CpG sites was significantly associated with attention problems after adjusting for multiple testing.
- These CpG sites were located in genes previously linked to ADHD and other health conditions.
- Some sites were also associated with prenatal risk factors in the NOVI sample.
Conclusions:
- Neonatal epigenetics, assessed at NICU discharge, can help identify preterm infants at risk for attention problems.
- Early identification may facilitate timely prevention and intervention for attention deficits and related psychiatric disorders.
Abstract:
Prior research has identified epigenetic predictors of attention problems in school-aged children but has not yet investigated these in young children, or children at elevated risk of attention problems due to preterm birth. The current study evaluated epigenome-wide associations between neonatal DNA methylation and attention problems at age 2 years in children born very preterm. Participants included 441 children from the Neonatal Neurobehavior and Outcomes in Very Preterm Infants (NOVI) Study, a multi-site study of infants born < 30 weeks gestational age. DNA methylation was measured from buccal swabs collected at NICU discharge using the Illumina MethylationEPIC Bead Array. Attention problems were assessed at 2 years of adjusted age using the attention problems subscale of the Child Behavior Checklist (CBCL). After adjustment for multiple testing, DNA methylation at 33 CpG sites was associated with child attention problems. Differentially methylated CpG sites were located in genes previously linked to physical and mental health, including several genes associated with ADHD in prior epigenome-wide and genome-wide association studies. Several CpG sites were located in genes previously linked to exposure to prenatal risk factors in the NOVI sample. Neonatal epigenetics measured at NICU discharge could be useful in identifying preterm children at risk for long-term attention problems and related psychiatric disorders, who could benefit from early prevention and intervention efforts.
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