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Flux Balance Analysis of Mammalian Cell Systems
James Morrissey1, Benjamin Strain1, Cleo Kontoravdi2
1Department of Chemical Engineering, Imperial College London, London, UK.
Abstract:
Flux balance analysis (FBA) is a computational methodology to model and analyze the metabolic behavior of cells. In this chapter, we break down the key steps for formulating an FBA model and other FBA-derived methodologies in the context of mammalian cell biology, including strain design, developing cell line-specific models, and conducting flux sampling. We provide annotated COBRApy code for each step to show how it would work in practice.
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