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Updated: Jul 1, 2025

Isolation of mRNAs Associated with Yeast Mitochondria to Study Mechanisms of Localized Translation
Published on: March 14, 2014
Localization of RNAs to the mitochondria-mechanisms and functions
Surbhi Sharma1,2, Furqan M Fazal3,4
1Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas 77030, USA.
Abstract:
The mammalian mitochondrial proteome comprises over 1000 proteins, with the majority translated from nuclear-encoded messenger RNAs (mRNAs). Mounting evidence suggests many of these mRNAs are localized to the outer mitochondrial membrane (OMM) in a pre- or cotranslational state. Upon reaching the mitochondrial surface, these mRNAs are locally translated to produce proteins that are cotranslationally imported into mitochondria. Here, we summarize various mechanisms cells use to localize RNAs, including transfer RNAs (tRNAs), to the OMM and recent technological advancements in the field to study these processes. While most early studies in the field were carried out in yeast, recent studies reveal RNA localization to the OMM and their regulation in higher organisms. Various factors regulate this localization process, including RNA sequence elements, RNA-binding proteins (RBPs), cytoskeletal motors, and translation machinery. In this review, we also highlight the role of RNA structures and modifications in mitochondrial RNA localization and discuss how these features can alter the binding properties of RNAs. Finally, in addition to RNAs related to mitochondrial function, RNAs involved in other cellular processes can also localize to the OMM, including those implicated in the innate immune response and piRNA biogenesis. As impairment of messenger RNA (mRNA) localization and regulation compromise mitochondrial function, future studies will undoubtedly expand our understanding of how RNAs localize to the OMM and investigate the consequences of their mislocalization in disorders, particularly neurodegenerative diseases, muscular dystrophies, and cancers.
Insights
Messenger RNAs (mRNAs) and other RNAs localize to the outer mitochondrial membrane (OMM) for local protein synthesis. This process is crucial for mitochondrial function and implicated in diseases like cancer and neurodegeneration.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- The majority of mitochondrial proteins are synthesized from nuclear-encoded messenger RNAs (mRNAs).
- Evidence indicates that many of these mRNAs are localized to the outer mitochondrial membrane (OMM) for pre- or cotranslational synthesis.
- Local translation at the OMM allows for cotranslational import of proteins into mitochondria.
Purpose of the Study:
- To review mechanisms of RNA localization to the OMM.
- To discuss technological advancements for studying OMM RNA localization.
- To highlight the role of RNA features and regulatory factors in this process.
Main Methods:
- Literature review of studies on RNA localization to the OMM.
- Analysis of factors regulating RNA localization, including sequence elements, RNA-binding proteins (RBPs), and cytoskeletal motors.
- Examination of the role of RNA structure and modifications.
Main Results:
- Multiple mechanisms facilitate RNA localization to the OMM in various organisms.
- RNA sequence elements, RBPs, cytoskeletal motors, and translation machinery regulate OMM RNA localization.
- RNA structures and modifications influence RNA binding and localization properties.
Conclusions:
- RNA localization to the OMM is a conserved and regulated process vital for mitochondrial function.
- Dysregulation of OMM RNA localization is linked to mitochondrial dysfunction and diseases, including neurodegenerative disorders, muscular dystrophies, and cancers.
- Further research is needed to fully understand OMM RNA localization and its pathological implications.
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