Related Experiment Video
Updated: May 10, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Genetic Testing Yield and Clinical Characteristics of Hypertrophic Cardiomyopathy in Understudied Ethnic Groups:
Nikki J Earle1,2, Annika Winbo3, Jackie Crawford2
1Departments of Medicine (N.J.E.), University of Auckland, New Zealand.
Genetic testing for hypertrophic cardiomyopathy (HCM) identified pathogenic variants in 40% of probands. Māori or Pacific individuals were less likely to have variants identified, highlighting ethnic disparities in HCM genetic diagnosis.
Area of Science:
- Cardiovascular Genetics
- Medical Genomics
- Population Health
Background:
- Hypertrophic cardiomyopathy (HCM) affects diverse populations, necessitating ethnicity-specific genetic insights.
- The Cardiac Inherited Diseases Registry New Zealand (CIDRNZ) provides a platform to study HCM genetics in Aotearoa/New Zealand's multiethnic cohort.
- Understanding genetic variant prevalence across ethnicities is crucial for equitable diagnostic strategies.
Purpose of the Study:
- To characterize HCM probands in New Zealand by ethnicity and genetic variant status.
- To determine the yield of clinical genetic testing for HCM across different ethnic groups.
- To analyze the spectrum of pathogenic/likely pathogenic (P/LP) variants in relation to self-identified ethnicity.
Main Methods:
- Analysis of clinical data, family history, and genetic test results from 336 HCM probands in the CIDRNZ over 17 years.
- Categorization of probands by self-identified ethnicity (European, Māori, Pacific, other).
- Assessment of P/LP variant detection rates and variant types stratified by ethnicity, sex, and clinical presentation.
Main Results:
- A pathogenic or likely pathogenic (P/LP) genetic variant was identified in 40% of all HCM probands.
- P/LP variant detection was lower in Māori or Pacific probands (27%) compared to European or other ethnicities (43%).
- Variant-positive probands were younger at diagnosis and more likely to have experienced sudden cardiac events.
Conclusions:
- P/LP variants in HCM are associated with earlier disease onset and increased risk of sudden cardiac events.
- Ethnic disparities exist in P/LP variant identification for HCM, with lower rates observed in Māori and Pacific populations.
- Targeted genetic testing strategies may be needed to address ethnic variations in HCM genetic diagnoses.
Related Concept Videos
Principles of Pharmacogenetics: Types of Genetic Variants
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu
Pharmacogenomics: Identification of New Drug Targets
Mitral Stenosis II: Clinical features and Diagnostic Tests
Cardiomyopathy I: Introduction and Classification
Cardiomyopathy III: Hypertrophic Cardiomyopathy

