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Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Genome-matched treatments and patient outcomes in the Maine Cancer Genomics Initiative (MCGI)
Eric C Anderson1,2, John DiPalazzo1, F Lee Lucas1
1Center for Interdisciplinary Population and Health Research, MaineHealth Institute for Research, Portland, ME, USA.
Abstract:
Genomic tumor testing (GTT) is an emerging technology aimed at identifying variants in tumors that can be targeted with genomically matched drugs. Due to limited resources, rural patients receiving care in community oncology settings may be less likely to benefit from GTT. We analyzed GTT results and observational clinical outcomes data from patients enrolled in the Maine Cancer Genomics Initiative (MCGI), which provided access to GTTs; clinician educational resources; and genomic tumor boards in community practices in a predominantly rural state. 1603 adult cancer patients completed enrollment; 1258 had at least one potentially actionable variant identified. 206 (16.4%) patients received a total of 240 genome matched treatments, of those treatments, 64% were FDA-approved in the tumor type, 27% FDA-approved in a different tumor type and 9% were given on a clinical trial. Using Inverse Probability of Treatment Weighting to adjust for baseline characteristics, a Cox proportional hazards model demonstrated that patients who received genome matched treatment were 31% less likely to die within 1 year compared to those who did not receive genome matched treatment (HR: 0.69; 95% CI: 0.52-0.90; p-value: 0.006). Overall, GTT through this initiative resulted in levels of genome matched treatment that were similar to other initiatives, however, clinical trials represented a smaller share of treatments than previously reported, and "off-label" treatments represented a greater share. Although this was an observational study, we found evidence for a potential 1-year survival benefit for patients who received genome matched treatments. These findings suggest that when disseminated and implemented with a supportive infrastructure, GTT may benefit cancer patients in rural community oncology settings, with further work remaining on providing genome-matched clinical trials.
Insights
Genomic tumor testing (GTT) can improve survival for rural cancer patients. This study found a 31% reduced risk of death within one year for patients receiving genome-matched treatments in community oncology settings.
Area of Science:
- Oncology
- Genomics
- Cancer Research
Background:
- Genomic tumor testing (GTT) identifies cancer variants for targeted therapies.
- Rural patients in community oncology settings may face barriers to accessing GTT.
- The Maine Cancer Genomics Initiative (MCGI) aimed to bridge this gap.
Purpose of the Study:
- To evaluate the impact of GTT and genome-matched treatments on cancer patient outcomes in a rural setting.
- To assess the types and accessibility of genome-matched treatments in community oncology.
- To determine if GTT implementation in rural areas improves survival.
Main Methods:
- Analysis of GTT results and clinical outcomes data from 1603 patients in the MCGI.
- Utilized Inverse Probability of Treatment Weighting and Cox proportional hazards models.
- Compared outcomes for patients receiving genome-matched treatments versus those who did not.
Main Results:
- 1258 patients had actionable variants; 206 received genome-matched treatments.
- Genome-matched treatments included FDA-approved drugs (64%), off-label use (27%), and clinical trials (9%).
- Patients receiving genome-matched treatment showed a 31% lower 1-year mortality risk (HR: 0.69, p=0.006).
Conclusions:
- GTT, with supportive infrastructure, may offer survival benefits to rural cancer patients.
- Genome-matched treatments were comparable to other initiatives, but clinical trial participation was lower.
- Further efforts are needed to expand access to genome-matched clinical trials in rural settings.

