Related Experiment Video
Updated: Jul 1, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Tetramerization is essential for the enzymatic function of the Pseudomonas aeruginosa virulence factor UDP-glucose
Larissa Dirr1, Sven Cleeves2,3, Isabel Ramón Roth4
1Institute for Glycomics, Gold Coast Campus, Griffith University, Gold Coast, Queensland, Australia.
Abstract:
Multidrug-resistant bacteria such as the opportunistic pathogen Pseudomonas aeruginosa, which causes life-threatening infections especially in immunocompromised individuals and cystic fibrosis patients, pose an increasing threat to public health. In the search for new treatment options, P. aeruginosa uridine diphosphate-glucose pyrophosphorylase (PaUGP) has been proposed as a novel drug target because it is required for the biosynthesis of important virulence factors and linked to pathogenicity in animal models. Here, we show that UGP-deficient P. aeruginosa exhibits severely reduced virulence against human lung tissue and cells, emphasizing the enzyme's suitability as a drug target. To establish a basis for the development of selective PaUGP inhibitors, we solved the product-bound crystal structure of tetrameric PaUGP and conducted a comprehensive structure-function analysis, identifying key residues at two different molecular interfaces that are essential for tetramer integrity and catalytic activity and demonstrating that tetramerization is pivotal for PaUGP function. Importantly, we show that part of the PaUGP oligomerization interface is uniquely conserved across bacterial UGPs but does not exist in the human enzyme, therefore representing an allosteric site that may be targeted to selectively inhibit bacterial UGPs.IMPORTANCEInfections with the opportunistic bacterial pathogen Pseudomonas aeruginosa are becoming increasingly difficult to treat due to multidrug resistance. Here, we show that the enzyme uridine diphosphate-glucose pyrophosphorylase (UGP) is involved in P. aeruginosa virulence toward human lung tissue and cells, making it a potential target for the development of new antibacterial drugs. Our exploration of P. aeruginosa (Pa)UGP structure-function relationships reveals that the activity of PaUGP depends on the formation of a tetrameric enzyme complex. We found that a molecular interface involved in tetramer formation is conserved in all bacterial UGPs but not in the human enzyme, and therefore hypothesize that it provides an ideal point of attack to selectively inhibit bacterial UGPs and exploit them as drug targets.
Insights
Pseudomonas aeruginosa uridine diphosphate-glucose pyrophosphorylase (PaUGP) is crucial for bacterial virulence. Targeting its tetramerization interface offers a novel strategy for developing selective antibacterial drugs against multidrug-resistant infections.
Area of Science:
- Microbiology
- Structural Biology
- Drug Discovery
Background:
- Multidrug-resistant *Pseudomonas aeruginosa* infections are a growing public health concern, particularly for immunocompromised individuals and cystic fibrosis patients.
- The enzyme *P. aeruginosa* uridine diphosphate-glucose pyrophosphorylase (PaUGP) is essential for virulence factor biosynthesis and pathogenicity, making it a promising drug target.
Purpose of the Study:
- To validate PaUGP as a drug target by assessing the virulence of UGP-deficient *P. aeruginosa*.
- To elucidate the structure-function relationship of PaUGP and identify potential sites for selective inhibition.
Main Methods:
- Determined the product-bound crystal structure of tetrameric PaUGP.
- Performed comprehensive structure-function analysis to identify key residues for tetramerization and catalytic activity.
- Compared PaUGP oligomerization interfaces with human UGP to find unique bacterial targets.
Main Results:
- UGP-deficient *P. aeruginosa* exhibited significantly reduced virulence against human lung tissue and cells.
- Tetramerization is essential for PaUGP catalytic activity, with specific residues at molecular interfaces critical for complex integrity.
- A unique bacterial UGP oligomerization interface, absent in human UGP, was identified as a potential allosteric inhibition site.
Conclusions:
- PaUGP is a validated drug target due to its essential role in *P. aeruginosa* virulence.
- The tetrameric structure of PaUGP is pivotal for its function, and its unique oligomerization interface provides a selective target for drug development.
- Targeting this conserved bacterial interface could lead to novel antibacterial therapies against multidrug-resistant *P. aeruginosa*.
Related Concept Videos
Protein Complex Assembly
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Allosteric Proteins-ATCase
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Protein Folding Quality Check in the RER
Catalytically Perfect Enzymes
Most enzymes...
Membrane Asymmetry Regulating Transporters
Flippase
Eukaryotic flippases are type-IV P-type ATPases or P4-ATPases belonging to P-type ATPase family proteins that are membrane-bound pumps involved in the ATP-mediated transport of ions and molecules across the membrane. Flippases flip specific phospholipids from the outer to the inner leaflet of a membrane. All P4-ATPases have one...
Translesion DNA Polymerases
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...

