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Updated: Jul 1, 2025

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Resistance Profile, Terbinafine Resistance Screening and MALDI-TOF MS Identification of the Emerging Pathogen
Roelke De Paepe1, Anne-Cécile Normand2, Silke Uhrlaß3
1Mycology and Aerobiology Department, Sciensano, 1050, Brussels, Belgium. roelke.depaepe@sciensano.be.
Abstract:
The emerging pathogen Trichophyton indotineae, often resistant to terbinafine (TRB), is known to cause severe dermatophytoses such as tinea corporis and tinea cruris. In order to achieve successful treatment for these infections, insight in the resistance profile of T. indotineae strains and rapid, reliable identification is necessary. In this research, a screening medium was tested on T. indotineae strains (n = 20) as an indication tool of TRB resistance. The obtained results were confirmed by antifungal susceptibility testing (AST) for TRB following the in vitro broth microdilution reference method. Additionally, AST was performed for eight other antifungal drugs: fluconazole, itraconazole, voriconazole, ketoconazole, griseofulvin, ciclopirox olamine, naftifine and amorolfine. Forty-five percent of the strains were confirmed to be resistant to terbinafine. The TRB resistant strains showed elevated minimal inhibitory concentration values for naftifine and amorolfine as well. DNA sequencing of the squalene epoxidase-encoding gene showed that TRB resistance was a consequence of missense point mutations in this gene, which led to amino acid substitutions F397L or L393F. MALDI-TOF MS was used as a quick, accurate identification tool for T. indotineae, as it can be challenging to distinguish it from closely related species such as Trichophyton mentagrophytes or Trichophyton interdigitale using morphological characteristics. While MALDI-TOF MS could reliably identify ≥ 95% of the T. indotineae strains (depending on the spectral library), it could not be used to successfully distinguish TRB susceptible from TRB resistant strains.
Insights
Emerging Trichophyton indotineae strains show high terbinafine resistance due to gene mutations. Rapid identification is crucial for treating severe fungal infections effectively.
Area of Science:
- Medical Mycology
- Antimicrobial Resistance
- Molecular Diagnostics
Background:
- Trichophyton indotineae causes severe dermatophytoses and often exhibits terbinafine resistance.
- Effective treatment necessitates understanding T. indotineae resistance profiles and rapid identification methods.
Purpose of the Study:
- To evaluate a screening medium for terbinafine resistance in T. indotineae.
- To confirm resistance via antifungal susceptibility testing (AST) and identify resistance mechanisms.
- To assess MALDI-TOF MS for rapid and accurate T. indotineae identification.
Main Methods:
- Screening medium test on 20 T. indotineae strains.
- Antifungal susceptibility testing (AST) for terbinafine and eight other antifungal drugs.
- DNA sequencing of the squalene epoxidase gene.
- MALDI-TOF Mass Spectrometry (MS) for species identification.
Main Results:
- 45% of T. indotineae strains were terbinafine-resistant.
- Terbinafine-resistant strains also showed elevated resistance to naftifine and amorolfine.
- Gene sequencing revealed missense point mutations (F397L or L393F) in the squalene epoxidase gene causing resistance.
- MALDI-TOF MS accurately identified T. indotineae strains but could not differentiate susceptible from resistant ones.
Conclusions:
- A significant proportion of T. indotineae strains are terbinafine-resistant, linked to specific gene mutations.
- MALDI-TOF MS is a valuable tool for rapid T. indotineae identification, aiding clinical management.
- Further methods are needed to distinguish terbinafine-resistant strains for targeted therapy.
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