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SAS: Split antibiotic selection for identifying chaperones that improve protein solubility.
Emily McNutt1, Na Ke1, Alexandre Thurman1
1New England Biolabs, 240 County Road, Ipswich, MA 01938, USA.
Heliyon
|March 18, 2024
Summary
Researchers developed a Split Antibiotic Selection (SAS) system to improve recombinant protein solubility in E. coli. This method links protein folding to cell viability, enabling efficient selection of beneficial chaperones for enhanced protein production.
Area of Science:
- Biotechnology
- Molecular Biology
- Protein Engineering
Background:
- Heterologous protein expression in Escherichia coli is crucial for research and industry.
- Achieving soluble and active recombinant proteins in E. coli presents significant challenges.
- Current methods for enhancing protein solubility are often time-consuming and lack a universal solution.
Purpose of the Study:
- To develop a novel genetic system for selecting protein folding factors.
- To link protein solubility directly to cellular viability for efficient screening.
- To create a versatile tool for improving recombinant protein production.
Main Methods:
- Developed a Split Antibiotic Selection (SAS) system using a tripartite fusion with aminoglycoside 7″-phosphotransferase-Ia (APH(7″)).
- Inserted target proteins in-frame within the APH(7″) coding sequence to create a solubility-dependent hygromycin B resistance.
- Utilized a chaperone library for pooled genetic selection to identify solubility-enhancing factors.
Main Results:
- Demonstrated SAS functionality with human mitochondrial Hsp70 ATPase domain and its co-chaperone Hep.
- Showcased that cellular hygromycin B resistance directly correlates with the solubility of the tripartite fusion protein.
- Successfully identified chaperones that improve client protein solubility using pooled SAS screening.
Conclusions:
- The tripartite APH(7″) fusion system effectively links in vivo protein solubility to hygromycin B resistance.
- SAS enables selection of chaperones that enhance the solubility of various client proteins.
- This system streamlines the identification of optimal folding conditions, reducing the need for individual testing.
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The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
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