Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Related Concept Videos

Methods to Assess Microbial Communities

Methods to Assess Microbial Communities

Microbial communities, comprising bacteria, archaea, and eukaryotic microorganisms, inhabit diverse ecosystems and play crucial roles in environmental and biological processes. Their diversity is defined by three main parameters: species richness (the number of distinct species), species abundance (the relative quantity of each species), and species evenness (how uniformly individual species are distributed in various locations). These factors together shape the structure and ecological balance...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by

Same author

Mapping the soil microbiome functions shaping wetland methane emissions.

mSystems·2026

Same author

Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient.

Nature communications·2025

Same author

Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature.

mSystems·2025

Same author

CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments.

Microbiology resource announcements·2025

Same author

Launching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity.

Nature microbiology·2025

Same author

Metabolic Redox Coupling Controls Methane Production in Permafrost-Affected Peatlands Through Organic Matter Quality-Dependent Energy Allocation.

Global change biology·2025

Same journal

A human-specific genetic modifier reconfigures large-scale cortical network dynamics underlying behavioral performance.

bioRxiv : the preprint server for biology·2026

Same journal

<i>Staphylococcus aureus</i> uses a eukaryotic-like uridyltransferase to make UDP-GlcNAc for cell wall synthesis.

bioRxiv : the preprint server for biology·2026

Same journal

Dynamic redistribution of eIF4F controls cap-dependent translation initiation.

bioRxiv : the preprint server for biology·2026

Same journal

When does additional information improve accuracy of RNA secondary structure prediction?

bioRxiv : the preprint server for biology·2026

Same journal

Normative brain-state trajectories reveal deviation from healthy aging in Alzheimer's disease.

bioRxiv : the preprint server for biology·2026

Same journal

Noradrenergic infraslow rhythm during sleep is the critical link between heart-rate dynamics and memory consolidation.

bioRxiv : the preprint server for biology·2026

See all related articles

Search research articles

Related Experiment Video

Updated: May 11, 2026

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

CAMPER: curated annotations for profiling microbial polyphenol metabolic potential.

Bridget B McGivern¹, Reed Woyda¹, Rory M Flynn¹

¹Colorado State University, Fort Collins, CO, USA.

Biorxiv : the Preprint Server for Biology

|March 18, 2024

Summary

This summary is machine-generated.

Microbial polyphenol metabolism is crucial for carbon cycling but lacks comprehensive gene databases. CAMPER is a new tool to identify these genes, aiding broader understanding of microbial ecosystems.

More Related Videos

High-Throughput Metabolic Profiling for Model Refinements of Microalgae

High-Throughput Metabolic Profiling for Model Refinements of Microalgae

Published on: December 4, 2021

Semi-Targeted Ultra-High-Performance Chromatography Coupled to Mass Spectrometry Analysis of Phenolic Metabolites in Plasma of Elderly Adults

Semi-Targeted Ultra-High-Performance Chromatography Coupled to Mass Spectrometry Analysis of Phenolic Metabolites in Plasma of Elderly Adults

Published on: April 22, 2022

Related Experiment Videos

Last Updated: May 11, 2026

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

High-Throughput Metabolic Profiling for Model Refinements of Microalgae

High-Throughput Metabolic Profiling for Model Refinements of Microalgae

Published on: December 4, 2021

Semi-Targeted Ultra-High-Performance Chromatography Coupled to Mass Spectrometry Analysis of Phenolic Metabolites in Plasma of Elderly Adults

Semi-Targeted Ultra-High-Performance Chromatography Coupled to Mass Spectrometry Analysis of Phenolic Metabolites in Plasma of Elderly Adults

Published on: April 22, 2022

Area of Science:

Microbial ecology
Biogeochemical cycles
Metagenomics

Background:

Polyphenols are vital carbon sources in various ecosystems.
Existing databases poorly represent microbial genes for polyphenol metabolism, hindering research.
Understanding microbial polyphenol degradation is key to microbial carbon cycling.

Approach:

Developed CAMPER, a computational tool for annotating polyphenol metabolism genes.
CAMPER integrates custom and database-derived searches for comprehensive gene identification.
The tool aids in identifying polyphenol-active genes and genomes within microbial datasets.

Key Points:

CAMPER enhances the discovery of microbial genes involved in polyphenol metabolism.
It enables broader surveying of microbial carbon cycling.
Facilitates understanding of microbial roles in terrestrial and host-associated systems.

Conclusions:

CAMPER provides a valuable resource for researchers studying microbial metabolism.
It addresses the limitations of current annotation databases for polyphenol-related genes.
The tool supports more extensive analysis of microbial carbon cycling in diverse environments.