Structure and Function of the α-Hydroxylation Bimodule of the Mupirocin Polyketide Synthase

Ashley J Winter1, R Nisha Khanizeman1, Abigail M C Barker-Mountford1

  • 1School of Chemistry University of Bristol Bristol BS8 1TS UK.

Angewandte Chemie (Weinheim an Der Bergstrasse, Germany)
|March 22, 2024
PubMed

Insights

Researchers characterized the alpha-hydroxylation bimodule in mupirocin biosynthesis. This study reveals the timing, substrate specificity, and acyl carrier protein (ACP) dependency of the MupA enzyme in producing the antibiotic pseudomonic acid A (PA-A).

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Natural Product Biosynthesis

Background:

  • Mupirocin, a vital antibiotic, is synthesized by a trans-AT Type I polyketide synthase (PKS) in Pseudomonas fluorescens.
  • The core structure of pseudomonic acid A (PA-A) requires a 6-hydroxy group, likely introduced via alpha-hydroxylation of an acyl carrier protein (ACP)-bound intermediate.

Purpose of the Study:

  • To characterize the alpha-hydroxylation bimodule responsible for introducing the 6-hydroxy group in mupirocin biosynthesis.
  • To elucidate the enzymatic mechanisms, substrate specificity, and timing of hydroxylation by the MupA enzyme.

Main Methods:

  • An in vitro approach combining purified enzyme components with chemical synthesis, isotopic labeling, mass spectrometry, and NMR.
  • In vivo studies were integrated to complement in vitro findings.
  • Purified enzyme assays were used to determine substrate specificity of MmpA KS^0.

Main Results:

  • The first characterization of the alpha-hydroxylation bimodule in the mupirocin pathway is presented.
  • Precise timing of hydroxylation by MupA, its substrate specificity, and acyl carrier protein (ACP) dependency were revealed.
  • MmpA KS^0 exhibited relaxed substrate specificity, indicating spatiotemporal control of MupA recruitment.

Conclusions:

  • The study provides a detailed understanding of the MupA-mediated alpha-hydroxylation step in pseudomonic acid A (PA-A) biosynthesis.
  • Intermodular MupA/ACP interactions suggest a mechanism for integrating MupA into the polyketide synthase assembly line.

Related Concept Videos

Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.7K
Structure of Porins01:21

Structure of Porins

Mitochondria, chloroplasts, and gram-negative bacteria have transmembrane, beta-barrel proteins called porins to mediate the free diffusion of ions and metabolites across the membrane. Mitochondrial porin precursors contain conserved amino acid sequences called beta signals at their C-terminal. Beta signals have a  motif of PoXGXXHyXHy (Po-Polar, X-Any amino acid, G-Glycine, Hy-LargeHydrophobic), which are crucial for precursor recognition to initiate precursor assembly. Beta-barrel...
3.0K
The Proteasome Structure01:17

The Proteasome Structure

The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
749
Reactions of Aldehydes and Ketones: Baeyer–Villiger Oxidation01:22

Reactions of Aldehydes and Ketones: Baeyer–Villiger Oxidation

Baeyer–Villiger oxidation converts aldehydes to carboxylic acids and ketones to esters. The reaction uses peroxy acids or peracids and is often catalyzed by acid. The reaction is named after its pioneers, Adolf von Baeyer and Victor Villiger. The reaction is achieved by a wide range of peracids such as m-chloroperoxybenzoic acid (mCPBA), perbenzoic acid (C6H5COOOH), peracetic acid (CH3COOOH), hydrogen peroxide (H2O2), and tert-butyl hydroperoxide (t-BuOOH).
The carbonyl center is...
4.1K
Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K
Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
6.8K