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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Efficient Machine Reading Comprehension for Health Care Applications: Algorithm Development and Validation of a
Duy-Anh Nguyen1, Minyi Li2, Gavin Lambert3,4
1School of Software and Electrical Engineering, Swinburne University of Technology, Hawthorn, Australia.
This study introduces a novel context extraction method to improve machine reading comprehension (MRC) models. The new approach enhances accuracy and significantly reduces processing time for complex, long-text domains.
Area of Science:
- Natural Language Processing
- Artificial Intelligence
- Machine Learning
Background:
- Extractive machine reading comprehension (MRC) models excel in open domains but struggle with complex, large-context areas like healthcare.
- Longer contexts lead to decreased accuracy and slower predictions in MRC models.
- Reducing input context by extracting only relevant information is a potential solution.
Purpose of the Study:
- To develop an effective context extraction method for MRC tasks.
- To enable MRC models to process long articles more efficiently and accurately.
- To enhance question-answering capabilities in specialized domains.
Main Methods:
- Developed a novel method to estimate sentence utility for answering questions within a given context.
- Trained two models to predict sentence utility based on empirical studies and MRC model confidence scores.
- Extracted a shorter, more precise context for the MRC model based on sentence utility estimations.
Main Results:
- Demonstrated effectiveness on COVID-19 and biomedical QA datasets.
- Reduced inference time by 6-7 times.
- Improved MRC model accuracy, with F1-scores increasing from 0.724 to 0.744 (COVID-19) and 0.651 to 0.704 (biomedical).
Conclusions:
- The proposed context extraction method enhances MRC prediction accuracy and significantly reduces inference time.
- This technique is compatible with any MRC model and applicable to tasks involving extensive text processing.
- Potential challenges exist where extractive transformer MRC models may still underperform even with precise contexts.
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