Understanding the redundant functions of the m6A-binding YTHDF proteins
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Updated: Jun 29, 2025

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Published on: May 17, 2016
Sara Zaccara1, Samie R Jaffrey2
1Department of Systems Biology, Columbia University Irving Medical Center, New York, New York 10032, USA srj2003@med.cornell.edu sz3145@cumc.columbia.edu.
Abstract:
N 6-methyladenosine (m6A) is the most prevalent modified nucleotide in mRNA, and it has important functions in mRNA regulation. However, our understanding of the specific functions of m6A along with its cytosolic readers, the YTHDF proteins, has changed substantially in recent years. The original view was that different m6A sites within an mRNA could have different functions depending on which YTHDF paralog was bound to it, with bound YTHDF1 inducing translation, while bound YTHDF2 induced mRNA degradation. As a result, each YTHDF was proposed to have unique physiologic roles that arise from their unique binding properties and regulatory effects on mRNA. More recent data have called much of this into question, showing that all m6A sites bind all YTHDF proteins with equal ability, with a single primary function of all three YTHDF proteins to mediate mRNA degradation. Here, we describe the diverse technical concerns that led to the original model being questioned and the newer data that overturned this model and led to the new understanding of m6A and YTHDF function. We also discuss how any remaining questions about the functions of the YTHDF proteins can be readily resolved.
Insights
N6-methyladenosine (m6A) and YTHDF proteins regulate mRNA. Recent studies reveal YTHDF proteins primarily mediate mRNA degradation, challenging earlier models of distinct roles.
Area of Science:
- Molecular Biology
- RNA Biology
- Epigenetics
Background:
- N6-methyladenosine (m6A) is the most abundant mRNA modification.
- YTHDF proteins are key cytosolic readers of m6A.
- Previous models proposed distinct roles for YTHDF paralogs in mRNA regulation.
Purpose of the Study:
- To re-evaluate the functions of m6A and YTHDF proteins.
- To address technical concerns that led to the original model.
- To present the current understanding of m6A-YTHDF interactions.
Main Methods:
- Review of existing literature and experimental data.
- Analysis of technical limitations in previous studies.
- Comparative assessment of m6A-binding affinities.
Main Results:
- All YTHDF proteins bind m6A sites with equal affinity.
- The primary function of YTHDF proteins is mRNA degradation.
- The original model of distinct YTHDF functions is largely invalidated.
Conclusions:
- The understanding of m6A and YTHDF protein function has significantly evolved.
- mRNA degradation is the conserved role for YTHDF proteins.
- Further research can resolve remaining questions regarding YTHDF functions.
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