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Updated: Jun 29, 2025

Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Promiscuous, persistent and problematic: insights into current enterococcal genomics to guide therapeutic strategy.
David Hourigan1,2, Ewelina Stefanovic1,3, Colin Hill1,2
1APC Microbiome Ireland, Biosciences Institute, Biosciences Research Institute, College Rd, University College, Cork, Ireland.
Vancomycin-resistant enterococci (VRE) are dangerous pathogens causing severe infections. Genomics reveals VRE
Area of Science:
- Microbiology
- Genomics
- Infectious Diseases
Background:
- Vancomycin-resistant enterococci (VRE) are significant opportunistic pathogens responsible for serious infections like urinary tract infections and endocarditis.
- VRE, primarily Enterococcus faecium and E. faecalis, colonize the gastrointestinal tract and can lead to systemic dissemination.
- Hospital-associated VRE strains exhibit increased mobile genetic elements, numerous antibiotic resistance genes, and often lack functional CRISPR-Cas systems.
Purpose of the Study:
- To review current knowledge on VRE genomics.
- To discuss state-of-the-art therapeutic advances against VRE infections.
Main Methods:
- Genomic analysis of VRE isolates.
- Comparative genomics to understand dissemination routes.
- Literature review of therapeutic strategies.
Main Results:
- Genomic studies highlight VRE characteristics including increased mobile genetic elements and antibiotic resistance genes.
- Comparative genomics aids in understanding VRE transmission pathways among patients and healthcare workers.
- Declining antibiotic efficacy necessitates novel control measures.
Conclusions:
- New strategies are crucial for controlling VRE infections due to diminishing antibiotic effectiveness.
- Potential approaches include antibiotic combinations, enhancing gut microbiota resistance, and utilizing non-antibiotic agents like bacteriophages or bacteriocins.
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