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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
Increase in invasive Streptococcus pyogenes M1 infections with close evolutionary genetic relationship, Iceland and
Stephen B Beres1, Randall J Olsen1,2, S Wesley Long1,2
1Laboratory of Molecular and Translational Human Infectious Disease Research, Center for Infectious Diseases, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, United States.
Abstract:
Group A Streptococcus isolates of the recently described M1UK clade have emerged to cause human infections in several European countries and elsewhere. Full-genome sequence analysis of M1 isolates discovered a close genomic relationship between some isolates from Scotland and the majority of isolates from Iceland causing serious infections in 2022 and 2023. Phylogenetic analysis strongly suggests that an isolate from or related to Scotland was the precursor to an M1UK variant responsible for almost all recent M1 infections in Iceland.
Insights
A new variant of Group A Streptococcus (M1UK clade) has caused serious infections. Genomic analysis reveals a likely origin in Scotland, preceding outbreaks in Iceland.
Area of Science:
- Microbiology
- Genomics
- Epidemiology
Background:
- Group A Streptococcus (GAS) M1UK clade infections are an emerging public health concern.
- Recent serious human infections caused by this clade have been reported in Europe.
Purpose of the Study:
- To investigate the genomic relationship between M1UK isolates from different geographical locations.
- To identify the potential origin and transmission dynamics of the M1UK variant.
Main Methods:
- Whole-genome sequencing of Group A Streptococcus M1 isolates.
- Phylogenetic analysis to determine evolutionary relationships.
Main Results:
- A close genomic relationship was identified between M1UK isolates from Scotland and Iceland.
- Phylogenetic analysis suggests a Scottish isolate or related strain was the precursor to the Icelandic M1UK variant.
Conclusions:
- The M1UK variant responsible for recent Icelandic infections likely originated from Scotland.
- Understanding the genomic epidemiology of GAS is crucial for tracking and controlling outbreaks.
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