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Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

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Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
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Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
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Accelerated Bayesian Inference for Molecular Simulations using Local Gaussian Process Surrogate Models.

Brennon L Shanks1, Harry W Sullivan1, Abdur R Shazed1

  • 1Department of Chemical Engineering, University of Utah, Salt Lake City, UT 84112-9202, United States.

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Local Gaussian processes (LGPs) accelerate Bayesian inference for complex physical chemistry simulations. This method significantly speeds up uncertainty quantification for large datasets, outperforming conventional approaches.

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Area of Science:

  • Physical Chemistry
  • Computational Chemistry
  • Statistical Modeling

Background:

  • Bayesian inference is crucial for uncertainty quantification but computationally intensive.
  • Modeling complex physical chemistry data, like spectra and scattering patterns, exacerbates computational challenges.
  • Existing methods struggle with high-dimensional datasets.

Purpose of the Study:

  • To introduce local Gaussian process (LGP) surrogate models for accelerating Bayesian inference.
  • To overcome computational barriers in physical chemistry simulations.
  • To enable efficient uncertainty quantification for complex thermophysical properties.

Main Methods:

  • Employed local Gaussian process (LGP) surrogate models.
  • Developed a method with linear time-complexity concerning independent variables.
  • Trained an LGP on the radial distribution function of liquid neon.

Main Results:

  • Achieved a 1,760,000-fold speed-up compared to molecular dynamics simulations.
  • Outperformed conventional Gaussian processes by three orders of magnitude.
  • Demonstrated linear scaling of LGP time-complexity with independent variables.

Conclusions:

  • LGPs are robust and efficient surrogate models for Bayesian inference.
  • LGPs significantly reduce computational cost in molecular simulations.
  • This approach expands Bayesian inference applications to diverse experimental data in physical chemistry.