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Exploring single-molecule interactions: heparin and FGF-1 proteins through solid-state nanopores.
Navod Thyashan1, Madhav L Ghimire1, Sangyoup Lee2
1Department of Mechanical Engineering, Southern Methodist University, Dallas, TX, 75205, USA. mjkim@lyle.smu.edu.
Nanoscale
|April 2, 2024
Summary
Solid-state nanopore sensing reveals single-molecule interactions between heparin and fibroblast growth factor 1 (FGF-1). This technology characterizes protein complexes, crucial for understanding diseases and developing therapies.
Area of Science:
- Biophysics
- Nanotechnology
- Molecular Biology
Background:
- Protein-protein interactions are vital for cellular functions like growth and repair.
- Heparin-fibroblast growth factor 1 (FGF-1) complex abnormalities are linked to diseases such as cancer and neurological disorders.
- Single-molecule analysis offers precise insights into these interactions.
Purpose of the Study:
- To investigate heparin-FGF-1 interactions at the single-molecule level using solid-state nanopore technology.
- To characterize the formation and properties of heparin-FGF-1 complexes without protein modification.
- To demonstrate the utility of nanopore sensing for studying protein complex dynamics.
Main Methods:
- Fabrication of 17 ± 1 nm solid-state nanopores using a controlled dielectric breakdown approach.
- Single-molecule translocation of individual heparin and FGF-1 proteins through nanopores.
- Analysis of current blockade signals to differentiate protein translocations and identify complex formation.
Main Results:
- Distinct current blockade signatures were observed for individual heparin and FGF-1 proteins.
- FGF-1's positively charged domains interacted with pore walls, causing higher current blockade.
- Binding of heparin stabilized FGF-1, forming complexes with larger excluded volumes, evidenced by increased current blockades.
Conclusions:
- Solid-state nanopore sensing is a sensitive method for characterizing individual proteins and their interactions.
- The study confirms heparin-FGF-1 binding and complex formation at the single-molecule level.
- This technique holds potential for developing novel medical therapies and advancing diagnostics.

