Cryo-EM structure of human HCN3 channel and its regulation by cAMP
Bo Yu1, Qiuyuan Lu2, Jian Li3
1The MOE Basic Research and Innovation Center for the Targeted Therapeutics of Solid Tumors, School of Basic Medical Sciences, Jiangxi Medical College, Nanchang University, Nanchang, China; The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, China.
Insights
Structural insights into human HCN3 channels reveal novel ligand binding sites. This research clarifies how cholesteryl hemisuccinate and cAMP modulate these channels, paving the way for new therapeutic strategies.
Area of Science:
- Molecular biology
- Structural biology
- Pharmacology
Background:
- Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels regulate heart rhythm and nerve activity.
- HCN channels are therapeutic targets for neurological and cardiac conditions, including epilepsy, pain, and arrhythmia.
- Mechanisms of ligand binding and modulation of HCN channels remain incompletely understood.
Purpose of the Study:
- To elucidate the molecular mechanisms of ligand binding and modulation in human HCN3 channels.
- To determine the structural basis for HCN channel regulation by small molecules.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to solve the structures of full-length human HCN3.
- Two distinct conformational states were captured: apo (ligand-free) and cAMP-bound.
Main Results:
- Novel binding sites for cholesteryl hemisuccinate in the apo state were identified.
- Structures reveal how cholesteryl hemisuccinate and cAMP binding induce conformational changes.
- Molecular-level understanding of how small modulators are sensed by HCN channels in mammals.
Conclusions:
- The study provides key structural insights into HCN3 channel gating and modulation.
- Findings facilitate the design of more potent and specific modulators of HCN channel activity.
- Offers potential for new therapeutic interventions for diseases involving HCN channel dysfunction.
Abstract:
HCN channels are important for regulating heart rhythm and nerve activity and have been studied as potential drug targets for treating depression, arrhythmia, nerve pain, and epilepsy. Despite possessing unique pharmacological properties, HCN channels share common characteristics in that they are activated by hyperpolarization and modulated by cAMP and other membrane lipids. However, the mechanisms of how these ligands bind and modulate HCN channels are unclear. In this study, we solved structures of full-length human HCN3 using cryo-EM and captured two different states, including a state without any ligand bound and a state with cAMP bound. Our structures reveal the novel binding sites for cholesteryl hemisuccinate in apo state and show how cholesteryl hemisuccinate and cAMP binding cause conformational changes in different states. These findings explain how these small modulators are sensed in mammals at the molecular level. The results of our study could help to design more potent and specific compounds to influence HCN channel activity and offer new therapeutic possibilities for diseases that lack effective treatment.
Related Concept Videos
Ligand-Gated Ion Channel Receptor: Gating Mechanism
G-Protein Gated Ion Channels
Sensory...
Calmodulin-dependent Signaling
The Ca2+-CaM complex does not have enzymatic activity by itself. Instead, the complex binds downstream target proteins, including membrane proteins or enzymes,...
Mechanically-gated Ion Channels
GPCRs Regulate Adenylyl Cylase Activity
Ligand-gated Ion Channels
Three Subfamilies of Ligand-gated Ion Channels
Ligand-gated ion channels fall into three subfamilies. The 'Cys-loop' includes the nicotinic acetylcholine receptors, γ-aminobutyric acid (GABA), glycine, and 5-hydroxytryptamine receptors. The second one is the 'Pore-loop' channels that...


