Related Experiment Video
Updated: Jun 28, 2025

Magnetic Tweezers for the Measurement of Twist and Torque
Published on: May 19, 2014
Enhancing torsional sampling using fully adaptive simulated tempering
Miroslav Suruzhon1, Khaled Abdel-Maksoud1, Michael S Bodnarchuk2
1School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom.
Abstract:
Enhanced sampling algorithms are indispensable when working with highly disconnected multimodal distributions. An important application of these is the conformational exploration of particular internal degrees of freedom of molecular systems. However, despite the existence of many commonly used enhanced sampling algorithms to explore these internal motions, they often rely on system-dependent parameters, which negatively impact efficiency and reproducibility. Here, we present fully adaptive simulated tempering (FAST), a variation of the irreversible simulated tempering algorithm, which continuously optimizes the number, parameters, and weights of intermediate distributions to achieve maximally fast traversal over a space defined by the change in a predefined thermodynamic control variable such as temperature or an alchemical smoothing parameter. This work builds on a number of previously published methods, such as sequential Monte Carlo, and introduces a novel parameter optimization procedure that can, in principle, be used in any expanded ensemble algorithms. This method is validated by being applied on a number of different molecular systems with high torsional kinetic barriers. We also consider two different soft-core potentials during the interpolation procedure and compare their performance. We conclude that FAST is a highly efficient algorithm, which improves simulation reproducibility and can be successfully used in a variety of settings with the same initial hyperparameters.
Related Concept Videos
Torsional Pendulum
As long as the rigid body's angular displacement is small, its oscillation can be modeled as a linear angular oscillation. The amplitude of the oscillation is an angle. The role of mass is played...
Bending and Torsional Moments
The reaction developed in a structural element when subjected to an external force causes the element to bend. When a structural element bends upwards, it creates compressive normal forces on the top and tensile normal forces on the bottom, resulting in a couple that determines the bending...
Sampling Continuous Time Signal
In the...
Temperature Dependent Deformation
Torsion of Noncircular Members
Sampling Theorem

