Defining and benchmarking open problems in single-cell analysis
Malte D Luecken1,2, Scott Gigante3, Daniel B Burkhardt4
1Institute of computational Biology, Helmholtz Munich, Neuherberg, Germany.
Research Square
|April 22, 2024
Abstract
None:
With the growing number of single-cell analysis tools, benchmarks are increasingly important to guide analysis and method development. However, a lack of standardisation and extensibility in current benchmarks limits their usability, longevity, and relevance to the community. We present Open Problems, a living, extensible, community-guided benchmarking platform including 10 current single-cell tasks that we envision will raise standards for the selection, evaluation, and development of methods in single-cell analysis.
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