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Published on: July 31, 2019
Identifying Gut Microbiome Features that Predict Responsiveness Toward a Prebiotic Capable of Increasing Calcium
Owen Ma1, Arindam Dutta2, Daniel W Bliss2
1Electrical Engineering, Arizona State University, 650 E Tyler Mall, Tempe, AZ, 85281, USA. owenma@asu.edu.
Insights
Prebiotics can improve calcium absorption for bone health, but not all children respond. Baseline gut microbiome analysis can predict which adolescents will benefit from prebiotic supplements with high accuracy.
Area of Science:
- Nutrition Science
- Microbiome Research
- Pediatric Bone Health
Background:
- Prebiotics show potential for enhancing calcium absorption in adolescents, crucial for bone health.
- Individual responses to prebiotic interventions vary, necessitating identification of predictive factors.
- Understanding gut microbiome composition is key to personalizing prebiotic strategies.
Purpose of the Study:
- To determine if baseline gut microbiome composition predicts adolescent responsiveness to prebiotic intervention for calcium absorption.
- To identify specific microbial taxa associated with increased calcium absorption following prebiotic supplementation.
- To develop a predictive model for identifying individuals likely to benefit from prebiotics.
Main Methods:
- A secondary analysis compared gut microbiota in responders and non-responders to soluble corn fiber (SCF).
- Fractional calcium absorption was measured using dual stable isotope methodologies.
- 16S rRNA gene sequencing characterized the gut microbiome, and machine learning models predicted responsiveness based on baseline data.
Main Results:
- A predictive model utilizing 19 microbial features accurately identified responders with 96.0% average accuracy.
- Significant differences in relative taxa abundance were observed between responders and non-responders.
- The findings highlight the potential for microbiome-based prescreening for prebiotic efficacy.
Conclusions:
- Baseline gut microbiome composition can predict adolescent response to prebiotics for enhancing calcium absorption.
- Microbiome profiling offers a potential method for prescreening individuals who may benefit from prebiotic interventions for bone health.
- Further research into the metabolic and genetic factors influencing calcium absorption during development is warranted.
Abstract:
Previously, we demonstrated that prebiotics may provide a complementary strategy for increasing calcium (Ca) absorption in adolescents which may improve long-term bone health. However, not all children responded to prebiotic intervention. We determine if certain baseline characteristics of gut microbiome composition predict prebiotic responsiveness. In this secondary analysis, we compared differences in relative microbiota taxa abundance between responders (greater than or equal to 3% increase in Ca absorption) and non-responders (less than 3% increase). Dual stable isotope methodologies were used to assess fractional Ca absorption at the end of crossover treatments with placebo, 10, and 20 g/day of soluble corn fiber (SCF). Microbial DNA was obtained from stool samples collected before and after each intervention. Sequencing of the 16S rRNA gene was used to taxonomically characterize the gut microbiome. Machine learning techniques were used to build a predictive model for identifying responders based on baseline relative taxa abundances. Model output was used to infer which features contributed most to prediction accuracy. We identified 19 microbial features out of the 221 observed that predicted responsiveness with 96.0% average accuracy. The results suggest a simplified prescreening can be performed to determine if a subject's bone health may benefit from a prebiotic. Additionally, the findings provide insight and prompt further investigation into the metabolic and genetic underpinnings affecting calcium absorption during pubertal bone development.
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