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Laser-capture Microdissection of Human Prostatic Epithelium for RNA Analysis
Published on: November 26, 2015
Single-cell analysis revealing the metabolic landscape of prostate cancer
Jing Wang1, He-Kang Ding2,3,4, Han-Jiang Xu2,3,4
1Department of Urologic Oncology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230031, China.
Abstract:
Tumor metabolic reprogramming is a hallmark of cancer development, and targeting metabolic vulnerabilities has been proven to be an effective approach for castration-resistant prostate cancer (CRPC) treatment. Nevertheless, treatment failure inevitably occurs, largely due to cellular heterogeneity, which cannot be deciphered by traditional bulk sequencing techniques. By employing computational pipelines for single-cell RNA sequencing, we demonstrated that epithelial cells within the prostate are more metabolically active and plastic than stromal cells. Moreover, we identified that neuroendocrine (NE) cells tend to have high metabolic rates, which might explain the high demand for nutrients and energy exhibited by neuroendocrine prostate cancer (NEPC), one of the most lethal variants of prostate cancer (PCa). Additionally, we demonstrated through computational and experimental approaches that variation in mitochondrial activity is the greatest contributor to metabolic heterogeneity among both tumor cells and nontumor cells. These results establish a detailed metabolic landscape of PCa, highlight a potential mechanism of disease progression, and emphasize the importance of future studies on tumor heterogeneity and the tumor microenvironment from a metabolic perspective.
Insights
Single-cell sequencing reveals prostate cancer
Area of Science:
- Oncology
- Metabolic pathways
- Cancer biology
Background:
- Metabolic reprogramming is key in cancer.
- Targeting metabolism shows promise for castration-resistant prostate cancer (CRPC).
- Cellular heterogeneity limits traditional bulk sequencing approaches.
Purpose of the Study:
- To investigate the metabolic landscape of prostate cancer (PCa) using single-cell RNA sequencing.
- To understand the metabolic differences between cell types in PCa.
- To identify metabolic drivers of neuroendocrine prostate cancer (NEPC) progression.
Main Methods:
- Computational analysis of single-cell RNA sequencing data.
- Experimental validation of computational findings.
- Analysis of metabolic heterogeneity and mitochondrial activity.
Main Results:
- Prostate epithelial cells are more metabolically active than stromal cells.
- Neuroendocrine (NE) cells exhibit high metabolic rates, potentially fueling NEPC.
- Mitochondrial activity variation is a major source of metabolic heterogeneity in PCa.
Conclusions:
- Single-cell analysis provides a detailed metabolic map of PCa.
- Metabolic heterogeneity, particularly mitochondrial activity, is crucial for PCa progression.
- Future research should focus on tumor heterogeneity and the tumor microenvironment from a metabolic viewpoint.

