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Updated: Jun 28, 2025

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Overcoming limitations in current measures of drug response may enable AI-driven precision oncology
Katja Ovchinnikova1, Jannis Born2, Panagiotis Chouvardas1,3
1Urology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland.
Abstract:
Machine learning (ML) models of drug sensitivity prediction are becoming increasingly popular in precision oncology. Here, we identify a fundamental limitation in standard measures of drug sensitivity that hinders the development of personalized prediction models - they focus on absolute effects but do not capture relative differences between cancer subtypes. Our work suggests that using z-scored drug response measures mitigates these limitations and leads to meaningful predictions, opening the door for sophisticated ML precision oncology models.
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