Decoding dynamic interactions between EGFR-TKD and DAC through computational and experimental approaches: A novel

Rajesh Kumar Meher1, Showkat Ahmad Mir1, Kritika Singh2

  • 1School of Life Sciences, Sambalpur University, Burla, Odisha, India.

Insights

CTX-1, a novel compound, shows significant promise as a lung cancer treatment. It effectively inhibits EGFR-TKD and outperforms erlotinib in preclinical models, offering a new therapeutic avenue.

Area of Science:

  • Oncology
  • Medicinal Chemistry
  • Molecular Biology

Background:

  • 3,6-diaminoacridine-9-carbonitrile (DAC) derivatives show potential in cancer therapy.
  • The efficacy of DAC compounds against lung cancer remains underexplored.
  • Epidermal Growth Factor Receptor (EGFR) mutations are key targets in lung cancer treatment.

Purpose of the Study:

  • To investigate the potential of CTX-1, a DAC derivative, as a novel lung cancer therapeutic.
  • To evaluate CTX-1's interaction with the EGFR-Tyrosine Kinase Domain (EGFR-TKD).
  • To compare the efficacy and stability of CTX-1 with erlotinib, a standard lung cancer drug.

Main Methods:

  • Molecular docking simulations to assess binding affinity to EGFR-TKD.
  • 100-ns molecular dynamics simulations to evaluate CTX-1 stability.
  • Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) for binding energy calculations.
  • In vitro testing against lung cancer cell lines (A549, Hop-62, H-1299).

Main Results:

  • CTX-1 demonstrated a higher binding affinity (-7.9 kcal/mol) to EGFR-TKD than erlotinib (-7.3 kcal/mol).
  • Molecular dynamics and MM-PBSA confirmed CTX-1's superior stability and binding energy.
  • CTX-1 significantly inhibited lung cancer cell viability, induced DNA damage, and promoted apoptosis.
  • CTX-1 effectively reduced reactive oxygen species (ROS) and mitochondrial potential, and inhibited EGFR-TKD.

Conclusions:

  • CTX-1 exhibits potent anticancer activity against diverse lung cancer cell lines.
  • CTX-1 represents a promising novel therapeutic agent for lung cancer treatment.
  • The findings suggest a paradigm shift in lung cancer therapeutics with CTX-1.