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Updated: Jun 27, 2025

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Ubiquitin-specific protease 7 inhibitors reveal a differentiated mechanism of p53-driven anti-cancer activity
Alan S Futran1, Tao Lu2, Katherine Amberg-Johnson1
1Schrödinger, 1540 Broadway 24th Floor, New York, NY, USA.
Abstract:
The USP7 deubiquitinase regulates proteins involved in the cell cycle, DNA repair, and epigenetics and has been implicated in cancer progression. USP7 inhibition has been pursued for the development of anti-cancer therapies. Here, we describe the discovery of potent and specific USP7 inhibitors exemplified by FX1-5303. FX1-5303 was used as a chemical probe to study the USP7-mediated regulation of p53 signaling in cells. It demonstrates mechanistic differences compared to MDM2 antagonists, a related class of anti-tumor agents that act along the same pathway. FX1-5303 synergizes with the clinically approved BCL2 inhibitor venetoclax in acute myeloid leukemia (AML) cell lines and ex vivo patient samples and leads to strong tumor growth inhibition in in vivo mouse xenograft models of multiple myeloma and AML. This work introduces new USP7 inhibitors, differentiates their mechanism of action from MDM2 inhibition, and identifies specific opportunities for their use in the treatment of AML.
Insights
New USP7 inhibitors, like FX1-5303, show promise for treating acute myeloid leukemia (AML) and multiple myeloma. These compounds offer a distinct mechanism from MDM2 antagonists and synergize with existing therapies.
Area of Science:
- Biochemistry
- Oncology
- Medicinal Chemistry
Background:
- The USP7 deubiquitinase enzyme plays a critical role in regulating key cellular processes, including cell cycle control, DNA repair, and epigenetic modifications.
- Dysregulation of USP7 activity has been linked to the progression of various cancers, making it a significant target for anti-cancer drug development.
Purpose of the Study:
- To discover and characterize novel, potent, and specific inhibitors of USP7.
- To investigate the USP7-mediated regulation of p53 signaling using FX1-5303 as a chemical probe.
- To explore the therapeutic potential of USP7 inhibitors in hematological malignancies, particularly acute myeloid leukemia (AML).
Main Methods:
- Discovery and profiling of USP7 inhibitors, exemplified by FX1-5303.
- Utilizing FX1-5303 as a chemical probe to elucidate USP7-dependent cellular pathways.
- Assessing the synergistic effects of FX1-5303 with venetoclax in AML cell lines and patient samples.
- Evaluating anti-tumor efficacy in in vivo mouse xenograft models of multiple myeloma and AML.
Main Results:
- Identification of FX1-5303 as a potent and specific USP7 inhibitor.
- Demonstration of distinct mechanistic differences between FX1-5303 and MDM2 antagonists.
- Significant synergy observed between FX1-5303 and venetoclax in AML models, both in vitro and ex vivo.
- Strong inhibition of tumor growth in vivo in models of multiple myeloma and AML.
Conclusions:
- Introduction of novel USP7 inhibitors with potential for cancer therapy.
- Clarification of the unique mechanism of action of USP7 inhibitors compared to MDM2 antagonists.
- Identification of a specific therapeutic opportunity for USP7 inhibitors in the treatment of AML, particularly in combination with BCL2 inhibitors.
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