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Updated: Jun 27, 2025

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A Tissue Clearing Method for Neuronal Imaging from Mesoscopic to Microscopic Scales
Published on: May 10, 2022
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Immunolabeling-compatible PEGASOS tissue clearing for high-resolution whole mouse brain imaging.
Pan Gao1, Matthew Rivera1, Xiaoxiao Lin1
1Department of Anatomy and Neurobiology, School of Medicine, University of California, Irvine, Irvine, CA, United States.
Frontiers in Neural Circuits
|May 2, 2024
Summary
This study introduces iPEGASOS, a novel method combining immunostaining with tissue clearing for enhanced whole-brain imaging. It overcomes signal loss, improving visualization of cellular populations, neural circuits, and Alzheimer's pathology.
Area of Science:
- Neuroscience
- Biotechnology
- Medical Imaging
Background:
- Advanced brain imaging techniques improve visualization but struggle to integrate with traditional immunostaining.
- Signal quenching during tissue clearing compromises molecular and genetic signals, limiting comprehensive brain analysis.
Purpose of the Study:
- To develop and validate an immunostaining-compatible tissue clearing method (iPEGASOS) for enhanced whole-brain visualization.
- To address signal quenching issues in conventional clearing procedures.
- To demonstrate the versatility of iPEGASOS for various neurobiological applications.
Main Methods:
- Integration of whole-mount immunostaining with PEGASOS tissue clearing to create iPEGASOS.
- Application of iPEGASOS to transgenic reporter mouse lines for cellular population mapping.
- Utilizing iPEGASOS for enhanced visualization of viral tracers in neural circuit tracing.
- Employing iPEGASOS for beta-amyloid deposit labeling in an Alzheimer's disease mouse model.
Main Results:
- iPEGASOS effectively enhances molecular-genetically targeted fluorescent signals compromised in conventional clearing.
- Improved visualization of whole-brain spatial distribution of specific cellular populations in transgenic mice.
- Significantly enhanced visualization of neural circuit connections via viral tracers.
- Successful labeling of beta-amyloid deposits for whole-brain pathological studies.
Conclusions:
- iPEGASOS provides a versatile and effective solution for whole-brain imaging by combining immunostaining with tissue clearing.
- This method overcomes previous limitations, enabling detailed visualization of cellular, circuit, and pathological features.
- iPEGASOS expands the possibilities for comprehensive neurobiological research and disease modeling.

