Related Experiment Video
Updated: Jul 22, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Multiple reports on the causal relationship between various chronic pain and gut microbiota: a two-sample Mendelian
Yuxin Cai1,2, Shuyang Wen1,2,3, Jinjing Hu1,2
1Department of Rehabilitation Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, China.
Background:
Previous evidence suggests a link between gut microbiota and chronic pain, but the causal relationship is not yet fully understood.
Methods:
We categorized gut microbiota based on phylum, class, order, family, and genus levels and gathered pain-related information from the UKB and FinnGen GWAS project. Then, we conducted MR analysis to explore the potential causal relationship between gut microbiota and chronic pain at 12 specific locations.
Results:
We have discovered a direct connection between genetic susceptibility in the gut microbiota (gut metabolites) and pain experienced at 12 specific locations. Notably, Serotonin (5-HT) and Glycine were found to be associated with a higher risk of pain in the extremities. On the other hand, certain microbial families and orders were found to have a protective effect against migraines. Specifically, the family Bifidobacteriaceae (IVW, FDR p = 0.013) was associated with a lower risk of migraines. Furthermore, the genus Oxalobacter (IVW, FDR p = 0.044) was found to be linked to an increased risk of low back pain. Importantly, these associations remained significant even after applying the Benjamini-Hochberg correction test. Our analysis did not find any heterogeneity in the data (p > 0.05), as confirmed by the Cochrane's Q-test. Additionally, both the MR-Egger and MR-PRESSO tests indicated no significant evidence of horizontal pleiotropy (p > 0.05).
Conclusion:
Our MR analysis demonstrated a causal relationship between the gut microbiota and pain, highlighting its potential significance in advancing our understanding of the underlying mechanisms and clinical implications of microbiota-mediated pain.
Insights
This study reveals a causal link between gut microbiota and chronic pain. Specific gut bacteria and metabolites influence pain risk, offering new insights into pain mechanisms.
Area of Science:
- Microbiome research
- Genetics
- Pain medicine
Background:
- The connection between gut microbiota and chronic pain is suggested but not fully understood.
- Investigating the causal relationship requires advanced analytical methods.
Purpose of the Study:
- To explore the potential causal relationship between gut microbiota and chronic pain at 12 specific locations.
- To identify specific microbial taxa and metabolites associated with pain risk.
Main Methods:
- Utilized UK Biobank and FinnGen GWAS data for pain information.
- Categorized gut microbiota at multiple taxonomic levels (phylum to genus).
- Performed Mendelian Randomization (MR) analysis to infer causality.
Main Results:
- Identified direct links between gut microbiota genetic susceptibility and pain at 12 sites.
- Serotonin (5-HT) and Glycine associated with higher extremity pain risk.
- Bifidobacteriaceae family linked to lower migraine risk; Oxalobacter genus linked to increased low back pain risk.
Conclusions:
- MR analysis confirmed a causal relationship between gut microbiota and pain.
- Findings highlight the microbiota's role in pain mechanisms and clinical implications.
Related Concept Videos
Genome-wide Association Studies-GWAS
GWAS does not require the identification of the target gene involved in...
Introduction to the Human Microbiota
Dysbiosis of the Gut Microbiota
Gut-Brain Axis
Microbiota Modulation by Antibiotics

