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A New Screening Method for the Directed Evolution of Thermostable Bacteriolytic Enzymes
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Engineering of chimeric enzymes with expanded tolerance to ionic strength.

Paweł Mitkowski1,2, Elżbieta Jagielska1,2, Izabela Sabała1,2

  • 1International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.

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|May 2, 2024
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Summary

Engineered chimeric enzymes show enhanced activity against antibiotic-resistant bacteria. Fusing peptidoglycan hydrolase EnpA catalytic domain with SH3b domains improves enzyme function in various conditions, aiding the fight against antimicrobial resistance.

Keywords:
E. faecalisEnpAM23S. aureusSH3bbacteriolytic enzymeschimera

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Area of Science:

  • Biochemistry
  • Microbiology
  • Protein Engineering

Background:

  • Antimicrobial resistance (AMR) is a critical global health crisis, leading to increased mortality from drug-resistant infections.
  • The development of novel antibacterial agents is urgently needed to combat the rising threat of AMR.
  • Peptidoglycan hydrolases are a promising class of bactericidal compounds with potential against resistant bacteria.

Purpose of the Study:

  • To engineer chimeric enzymes by combining the EnpA catalytic domain (EnpA_CD) with SH3b cell wall-binding domains.
  • To enhance the stability and activity of EnpA_CD under diverse environmental conditions, including serum.
  • To explore the potential of protein engineering in developing new strategies against antimicrobial resistance.

Main Methods:

  • Cloning and characterization of the M23 catalytic domain of EnpA from *Enterococcus faecalis*.
  • Engineering of three chimeric enzymes by fusing EnpA_CD with distinct SH3b domains.
  • Assessment of chimeric enzyme activity and tolerance to varying ionic strength, pH, and serum conditions.

Main Results:

  • The engineered chimeric enzymes demonstrated improved tolerance to environmental conditions compared to the native EnpA_CD.
  • Chimeric enzymes maintained sustained activity in both bovine and human serum.
  • The addition of SH3b domains modulated the activity profile of the chimeric enzymes, broadening their applicability.

Conclusions:

  • Fusion of SH3b-binding domains to EnpA_CD generates chimeras with enhanced tolerance to ionic strength and pH.
  • Engineered enzymes remain active over a wider range of conditions, offering a straightforward method for developing antibacterial agents.
  • Protein engineering of enzymes like EnpA_CD provides a viable strategy for creating tailored antibacterial agents to combat antimicrobial resistance effectively.