SMAD4 mosaicism in juvenile polyposis: Essential contribution of somatic analysis in diagnosis
Sabine Vautier1, Jacques Mauillon2, Nathalie Parodi2
1Department of Genetics, Univ Rouen Normandie, Normandie Univ, Inserm U1245 and CHU Rouen, Rouen, France.
Abstract:
Juvenile polyposis syndrome (JPS) is a rare disease characterized by multiple hamartomatous polyps in the gastrointestinal tract, associated with pathogenic variants of BMPR1A and SMAD4. We present the description of SMAD4 mosaicism in a 30-year-old man who had caecum adenocarcinoma, 11 juvenile colon polyps and epistaxis since childhood. We conducted NGS polyposis and CRC panel analysis on DNA extracted from two polyps, revealing a likely pathogenic SMAD4 variant: NM_005359.5:c. 1600C>T, p.(Gln534*). This variant was then identified at a very low frequency on blood and normal colonic tissue, by targeted visualization of previously obtained NGS data. These findings support the presence of a likely pathogenic mosaic SMAD4 variant that aligns with the patient's phenotype. Given the relatively frequent occurrence of de novo SMAD4 mutations, somatic mosaicism could account for a significant proportion of sporadic JPS patients with unidentified pathogenic variants. This case underscores the diagnosis challenge of detecting mosaicism and emphasizes the importance of somatic analyses.
Insights
Juvenile polyposis syndrome (JPS) can be caused by mosaic SMAD4 variants. Detecting this mosaicism is crucial for diagnosing JPS and identifying cancer risks.
Area of Science:
- Genetics
- Gastroenterology
- Oncology
Background:
- Juvenile polyposis syndrome (JPS) is a rare inherited disorder.
- It involves hamartomatous polyps in the GI tract.
- Pathogenic variants in BMPR1A and SMAD4 genes are associated with JPS.
Observation:
- A 30-year-old male presented with caecum adenocarcinoma and multiple juvenile colon polyps.
- He had a history of epistaxis since childhood.
- SMAD4 mosaicism was investigated as a potential cause.
Findings:
- Next-generation sequencing (NGS) identified a likely pathogenic SMAD4 variant (NM_005359.5:c.1600C>T, p.(Gln534*)) in colon polyps.
- This variant was detected at low frequency in blood and normal colonic tissue, confirming mosaicism.
- The findings support a mosaic SMAD4 variant correlating with the patient's JPS phenotype.
Implications:
- Somatic mosaicism may explain a significant portion of sporadic JPS cases with unidentified variants.
- This case highlights the diagnostic challenges in detecting mosaicism.
- Somatic analyses are important for accurate JPS diagnosis and risk assessment.
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