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Published on: July 7, 2023
Progression subtypes in Parkinson's disease identified by a data-driven multi cohort analysis
Tom Hähnel1,2, Tamara Raschka3,4, Stefano Sapienza5,6
1Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany. tom.haehnel@scai-extern.fraunhofer.de.
Parkinson's disease (PD) heterogeneity is explained by two distinct progression subtypes: fast and slow. Identifying these subtypes can significantly reduce clinical trial sizes by focusing on fast-progressing patients.
Area of Science:
- Neurology
- Data Science
- Clinical Trials
Background:
- Parkinson's disease (PD) progression varies significantly among patients, complicating treatment strategies and clinical trial design.
- Distinct PD subtypes may necessitate tailored therapeutic approaches.
Purpose of the Study:
- To identify and validate distinct Parkinson's disease progression subtypes using a data-driven approach.
- To investigate if observed heterogeneity in PD can be attributed to underlying progression subtypes.
Main Methods:
- Analysis of multimodal longitudinal data from three large PD cohorts with cross-cohort validation.
- Application of a latent time joint mixed-effects model (LTJMM) for timescale alignment.
- Identification of progression subtypes using variational deep embedding with recurrence (VaDER).
Main Results:
- Two stable PD progression subtypes (fast and slow) were identified across cohorts.
- Subtypes differed in motor/non-motor symptoms, survival, treatment response, imaging, gait, and Alzheimer's pathology.
- Predictive models achieved an ROC-AUC of 0.79 for individual patient subtype prediction.
- Simulations indicated a 43% reduction in clinical trial size by enriching fast-progressing patients.
Conclusions:
- PD heterogeneity can be explained by two distinct, stable progression subtypes.
- These subtypes may align with the brain-first vs. body-first concept, offering biological insights.
- Predictive models can optimize clinical trials by enabling enrichment of fast-progressing patient cohorts.
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