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Challenges of COVID-19 Case Forecasting in the US, 2020-2021
Velma K Lopez1, Estee Y Cramer2, Robert Pagano3
1COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Plos Computational Biology
|May 6, 2024
Summary
COVID-19 case forecasts showed varied accuracy, with ensemble models performing best. Forecasts struggled during rapid case changes, highlighting limitations for pandemic planning.
Area of Science:
- Epidemiology
- Public Health
- Data Science
Background:
- Accurate forecasting of COVID-19 trends was crucial for pandemic response and planning.
- The US COVID-19 Forecast Hub coordinated numerous forecasting efforts.
- Evaluating forecast performance across different epidemic phases is essential.
Purpose of the Study:
- To assess the accuracy and reliability of COVID-19 case forecasts submitted to the US COVID-19 Forecast Hub.
- To compare the performance of different forecasting models and approaches.
- To identify factors influencing forecast accuracy, such as epidemic phase and jurisdiction size.
Main Methods:
- Analysis of approximately 9.7 million weekly state-level COVID-19 case forecasts (1-4 weeks ahead) from 24 teams (August 2020 - December 2021).
- Assessment of prediction interval coverage and weighted interval scores (WIS), adjusting for missing data.
- Use of Gaussian generalized estimating equation (GEE) models to evaluate skill across epidemic phases defined by the effective reproduction number.
Main Results:
- Significant variation in forecast skill across individual models; ensemble-based forecasts generally outperformed others.
- Forecast skill was higher for larger jurisdictions (states vs. counties).
- Forecasts performed poorly during periods of rapid case increases or decreases, with 95% prediction interval coverage falling below 50% during major waves (Winter 2020, Delta, Omicron).
Conclusions:
- While most COVID-19 case forecasts surpassed baseline models, even the best were unreliable during critical epidemic phases.
- Limitations in current case forecasting necessitate cautious interpretation and the use of diverse indicators for decision-making.
- Future research should focus on integrating real-time data, improving phase-specific performance, quantifying forecast confidence, and ensuring spatial coherence.
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