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Updated: Jun 26, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Modulation of multiple sclerosis risk and pathogenesis by the gut microbiota: Complex interactions between host
Theresa L Montgomery1, Daniel Peipert1, Dimitry N Krementsov1
1Department of Biomedical and Health Sciences, University of Vermont, Burlington, Vermont, USA.
Abstract:
Multiple sclerosis (MS) is an autoimmune disease of the central nervous system, affecting nearly 2 million people worldwide. The etiology of MS is multifactorial: Approximately 30% of the MS risk is genetic, which implies that the remaining ~70% is environmental, with a number of factors proposed. One recently implicated risk factor for MS is the composition of the gut microbiome. Numerous case-control studies have identified changes in gut microbiota composition of people with MS (pwMS) compared with healthy control individuals, and more recent studies in animal models have begun to identify the causative microbes and underlying mechanisms. Here, we review some of these mechanisms, with a specific focus on the role of host genetic variation, dietary inputs, and gut microbial metabolism, with a particular emphasis on short-chain fatty acid and tryptophan metabolism. We put forward a model where, in an individual genetically susceptible to MS, the gut microbiota and diet can synergize as potent environmental modifiers of disease risk and possibly progression, with diet-dependent gut microbial metabolites serving as a key mechanism. We also propose that specific microbial taxa may have divergent effects in individuals carrying distinct variants of MS risk alleles or other polymorphisms, as a consequence of host gene-by-gut microbiota interactions. Finally, we also propose that the effects of specific microbial taxa, especially those that exert their effects through metabolites, are highly dependent on the host dietary intake. What emerges is a complex multifaceted interaction that has been challenging to disentangle in human studies, contributing to the divergence of findings across heterogeneous cohorts with differing geography, dietary preferences, and genetics. Nonetheless, this provides a complex and individualized, yet tractable, model of how the gut microbiota regulate susceptibility to MS, and potentially progression of this disease. Thus, we conclude that prophylactic or therapeutic modulation of the gut microbiome to prevent or treat MS will require a careful and personalized consideration of host genetics, baseline gut microbiota composition, and dietary inputs.
Insights
The gut microbiome and diet interact with host genetics to influence multiple sclerosis (MS) risk and progression. Personalized interventions targeting the gut microbiota, considering genetics and diet, may help prevent or treat MS.
Area of Science:
- Neuroimmunology
- Microbiome Research
- Genetic Epidemiology
Background:
- Multiple sclerosis (MS) is a chronic autoimmune disease of the central nervous system affecting millions globally.
- While genetics contribute ~30% to MS risk, environmental factors, particularly the gut microbiome, play a significant role in the remaining ~70%.
- Previous studies show altered gut microbiota composition in people with MS (pwMS) compared to healthy controls.
Purpose of the Study:
- To review mechanisms linking gut microbiota, diet, and host genetics in MS etiology and progression.
- To propose a model where diet-dependent microbial metabolites modify MS risk in genetically susceptible individuals.
- To highlight the complexity of host gene-by-gut microbiota interactions in MS.
Main Methods:
- Review of existing literature on gut microbiota, diet, host genetics, and MS.
- Focus on mechanisms involving short-chain fatty acid and tryptophan metabolism.
- Analysis of host gene-by-gut microbiota interactions.
Main Results:
- Gut microbiota and diet act synergistically to modify MS risk and progression.
- Diet-dependent microbial metabolites are key mediators.
- Specific microbial taxa effects can vary based on host genetic variants.
Conclusions:
- A complex, individualized model explains gut microbiota's role in MS susceptibility and progression.
- Therapeutic strategies for MS must consider host genetics, baseline microbiota, and dietary inputs.
- Personalized modulation of the gut microbiome holds potential for MS prevention and treatment.
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