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Calibration plots for multistate risk predictions models.

Alexander Pate1, Matthew Sperrin1,2, Richard D Riley3

  • 1Centre for Health Informatics, Imaging and Data Science, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, UK.

Statistics in Medicine
|May 9, 2024
PubMed
Summary
This summary is machine-generated.

This study introduces methods to assess calibration in multistate models for risk prediction. Pseudo-value and binary logistic regression with inverse probability of censoring weights (BLR-IPCW) methods provide reliable calibration curves, even with censoring.

Keywords:
calibrationclinical predictionmodel validationmultistate modelrisk prediction

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Area of Science:

  • Biostatistics
  • Epidemiology
  • Health Informatics

Background:

  • Lack of established methods for assessing calibration in multistate risk prediction models.
  • Need for reliable calibration assessment in the presence of censoring.

Purpose of the Study:

  • Introduce and evaluate techniques for generating calibration plots for multistate model transition probabilities.
  • Assess the performance of these techniques under random and independent censoring.

Main Methods:

  • Utilized pseudo-values (Aalen-Johansen estimator), binary logistic regression with inverse probability of censoring weights (BLR-IPCW), and multinomial logistic regression with inverse probability of censoring weights (MLR-IPCW).
  • Simulated data with varying censoring levels to evaluate calibration curve estimation.
  • Applied methods to a real-world cohort for predicting multiple chronic diseases.

Main Results:

  • Pseudo-value, BLR-IPCW, and MLR-IPCW methods yielded unbiased calibration curve estimates under random censoring.
  • These methods demonstrated robustness against independent censoring, with minimal bias in high-density prediction regions.
  • MLR-IPCW provided additional insight through a calibration scatter plot.

Conclusions:

  • Recommend pseudo-value or BLR-IPCW for calibration curves and MLR-IPCW for scatter plots.
  • The developed methods are integrated into the "calibmsm" R package.
  • These tools enhance the reliability of multistate models in risk prediction.