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Updated: Jun 26, 2025

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'rtry': An R package to support plant trait data preprocessing.

Olee Hoi Ying Lam1,2, Jens Kattge2,3, Susanne Tautenhahn2

  • 1Department of Forest and Wildlife Ecology University of Wisconsin-Madison, Russell Laboratories Madison Wisconsin USA.

Ecology and Evolution
|May 10, 2024
PubMed
Summary
This summary is machine-generated.

The rtry R package simplifies preprocessing plant trait data from the TRY initiative and other sources. It enhances data quality for ecological research by offering user-friendly functions for filtering and exploration.

Keywords:
R packageTRY databasebiodiversitydata cleaningdata preprocessingplant trait

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Area of Science:

  • Ecology
  • Bioinformatics
  • Data Science

Background:

  • Plant trait data are crucial for understanding ecosystem function and plant responses to environmental factors.
  • Interacting effects on traits and non-standardized measurement protocols create challenges in data interpretation.
  • The TRY initiative provides a large, integrated database of plant trait data with associated ancillary information.

Purpose of the Study:

  • To introduce the 'rtry' R package, designed for efficient preprocessing of plant trait data.
  • To streamline data exploration and filtering for users working with large plant trait datasets.
  • To improve the accessibility and usability of plant trait data for ecological research.

Main Methods:

  • Development of the 'rtry' R package, integrating essential preprocessing functions.
  • Focus on data exploration and filtering, excluding data retrieval and analysis.
  • Providing a consistent syntax for R users, including beginners.
  • Demonstrating utility with TRY data and extending to other sources like NEON.

Main Results:

  • The 'rtry' package offers a user-friendly interface for plant trait data preprocessing.
  • It simplifies complex filtering and exploration tasks, enhancing data quality.
  • The package is available on CRAN and GitHub with comprehensive documentation.

Conclusions:

  • The 'rtry' package significantly aids researchers in preparing plant trait data for analysis.
  • Its design facilitates easier use of large datasets from initiatives like TRY.
  • Improved data preprocessing supports more robust ecological research and understanding of plant traits.