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Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
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Individual identification method using samples associated with doping tests: A comparison of mitochondrial and
Kentaro Akiyama1, Atsushi Momobayashi1, Masato Okano1
1Anti-Doping Laboratory, LSI Medience Corporation, Tokyo, Japan.
Drug Testing and Analysis
|May 10, 2024
Summary
Mitochondrial DNA (mtDNA) testing offers greater sensitivity than short tandem repeat (STR) analysis for doping control, especially with degraded samples like urine. mtDNA analysis is valuable for identifying athletes from challenging samples.
Area of Science:
- Forensic Science
- Biochemistry
- Genetics
Background:
- Doping control involves detecting prohibited substances or sample manipulation.
- Short tandem repeat (STR) analysis is standard for athlete identification but struggles with limited DNA.
- Mitochondrial DNA (mtDNA) offers stability and high copy numbers, making it suitable for degraded samples.
Purpose of the Study:
- To compare the efficacy of mitochondrial DNA (mtDNA) testing against short tandem repeat (STR) analysis in doping control.
- To evaluate sensitivity, concordance across different sample types (blood, dried blood spot, urine), and performance on case-type samples.
Main Methods:
- Sensitivity studies comparing mtDNA and STR analysis.
- Concordance studies using whole blood, dried blood spots, and urine samples.
- Case-type studies involving various biological samples including urine, blood residues, and stains.
Main Results:
- mtDNA testing demonstrated superior sensitivity compared to STR analysis.
- High concordance was observed between mtDNA sequences and STR profiles across all sample types.
- STR analysis showed allelic dropout in some urine samples, whereas mtDNA testing successfully generated DNA profiles from all tested samples, including degraded ones.
Conclusions:
- mtDNA testing is a valuable tool for analyzing highly degraded DNA samples, particularly urine, in doping control.
- Initial urine testing using mtDNA is recommended due to its effectiveness with challenging samples.
- Confirmatory STR analysis from blood may be necessary in cases where a DNA match has significant implications for the athlete.
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