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Updated: Jun 26, 2025

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
FOXK2 targeting by the SCF-E3 ligase subunit FBXO24 for ubiquitin mediated degradation modulates mitochondrial
Rabab El-Mergawy1, Lexie Chafin1, Jose A Ovando-Ricardez1
1Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, USA.
Abstract:
FOXK2 is a crucial transcription factor implicated in a wide array of biological activities and yet understanding of its molecular regulation at the level of protein turnover is limited. Here, we identify that FOXK2 undergoes degradation in lung epithelia in the presence of the virulent pathogens Pseudomonas aeruginosa and Klebsiella pneumoniae through ubiquitin-proteasomal processing. FOXK2 through its carboxyl terminus (aa 428-478) binds the Skp-Cullin-F-box ubiquitin E3 ligase subunit FBXO24 that mediates multisite polyubiquitylation of the transcription factor resulting in its nuclear degradation. FOXK2 was detected within the mitochondria and targeted depletion of the transcription factor or cellular expression of FOXK2 mutants devoid of key carboxy terminal domains significantly impaired mitochondrial function. In experimental bacterial pneumonia, Fbxo24 heterozygous mice exhibited preserved mitochondrial function and Foxk2 protein levels compared to WT littermates. The results suggest a new mode of regulatory control of mitochondrial energetics through modulation of FOXK2 cellular abundance.
Insights
The transcription factor FOXK2 degrades during bacterial pneumonia, impacting mitochondrial function. Inhibiting its degradation preserves mitochondrial health, revealing a new regulatory mechanism.
Area of Science:
- Molecular Biology
- Cellular Biology
- Pathogen-Host Interactions
Background:
- The transcription factor FOXK2 plays a vital role in numerous biological processes.
- Limited understanding exists regarding the protein turnover and regulation of FOXK2.
Purpose of the Study:
- To investigate the molecular mechanisms regulating FOXK2 protein stability.
- To explore the role of FOXK2 in cellular responses to bacterial pathogens and its impact on mitochondrial function.
Main Methods:
- Utilized cell culture models with virulent pathogens (Pseudomonas aeruginosa, Klebsiella pneumoniae).
- Investigated protein degradation pathways, including ubiquitin-proteasomal processing.
- Employed molecular techniques to identify protein interactions and functional domains (e.g., FBXO24 binding site).
- Assessed mitochondrial function through targeted gene depletion and mutant expression.
- Utilized a mouse model of experimental bacterial pneumonia.
Main Results:
- FOXK2 undergoes ubiquitin-proteasomal degradation in lung epithelia during infection with P. aeruginosa and K. pneumoniae.
- The E3 ligase subunit FBXO24 binds FOXK2's carboxyl terminus, mediating its polyubiquitylation and nuclear degradation.
- FOXK2 is present in mitochondria, and its depletion or mutation impairs mitochondrial function.
- In a bacterial pneumonia model, Fbxo24 heterozygous mice showed preserved mitochondrial function and FOXK2 levels compared to wild-type littermates.
Conclusions:
- Identified a novel mechanism of FOXK2 regulation via FBXO24-mediated degradation during bacterial infection.
- Demonstrated that FOXK2 abundance influences mitochondrial energetics.
- Suggests a new pathway for controlling mitochondrial function through the modulation of FOXK2 protein levels in response to pathogens.
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