Related Experiment Video
Updated: Jun 26, 2025

Author Spotlight: Exploring the Frontier of mRNA Research with Poly A Tail Analysis Techniques
Published on: January 12, 2024
Quality Control of mRNA Vaccines by Synthetic Ribonucleases: Analysis of the Poly-A-Tail
Felix Zellmann1, Nina Schmauk1, Nina Murmann2
1Analytical Development CureVac SE, Friedrich-Miescher-Str. 15, 72076, Tübingen, Germany.
Abstract:
The effectivity and safety of mRNA vaccines critically depends on the presence of correct 5' caps and poly-A tails. Due to the high molecular mass of full-size mRNAs, however, the direct analysis by mass spectrometry is hardly possible. Here we describe the use of synthetic ribonucleases to cleave off 5' and 3' terminal fragments which can be further analyzed by HPLC or by LC-MS. Compared to existing methods (e. g. RNase H), the new approach uses robust catalysts, is free of sequence limitations, avoids metal ions and combines fast sample preparation with high precision of the cut.
Insights
New synthetic ribonucleases precisely analyze mRNA caps and tails, crucial for vaccine effectiveness. This method overcomes mass spectrometry limitations for robust mRNA vaccine quality control.
Area of Science:
- Biochemistry
- Molecular Biology
- Vaccine Technology
Background:
- mRNA vaccine efficacy and safety rely on accurate 5' caps and poly-A tails.
- Analyzing these terminal structures on full-size mRNAs is challenging due to their high molecular mass, limiting direct mass spectrometry use.
Purpose of the Study:
- To develop a novel method for analyzing mRNA 5' caps and poly-A tails.
- To overcome the limitations of existing analytical techniques for mRNA terminal structures.
Main Methods:
- Utilized synthetic ribonucleases for targeted cleavage of 5' and 3' mRNA fragments.
- Employed High-Performance Liquid Chromatography (HPLC) and Liquid Chromatography-Mass Spectrometry (LC-MS) for fragment analysis.
- Compared the new method with existing techniques like RNase H digestion.
Main Results:
- The synthetic ribonuclease approach enables precise analysis of mRNA terminal fragments.
- This method is robust, sequence-independent, and does not require metal ions.
- Achieved fast sample preparation combined with high cutting precision, outperforming traditional methods.
Conclusions:
- Synthetic ribonucleases offer a superior alternative for analyzing mRNA caps and poly-A tails.
- This technique enhances the quality control of mRNA, vital for vaccine development and safety.
- The method provides a precise, efficient, and versatile tool for mRNA structural analysis.
Related Concept Videos
Nonsense-mediated mRNA Decay
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
mRNA Stability and Gene Expression
Cis-acting Elements involved in mRNA stability
Ribosome Profiling
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Leaky Scanning
RNA Stability
Nuclear Export of mRNA

